CFinderADM000767's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chlorophyll(ide) b reductase activity | 8.78E-06 | GO:0034256 |
| chlorophyll cycle | 1.06E-05 | plantCyc |
| transcription factor activity, transcription factor binding | 4.09E-05 | GO:0000989 |
| PSII associated light-harvesting complex II catabolic process | 8.19E-05 | GO:0010304 |
| Transcription_related, Transcription factor: NF-YB | 9.00E-05 | TF family |
| protein complex | 9.39E-05 | GO:0043234 |
| chlorophyll catabolic process | 9.64E-05 | GO:0015996 |
| regulation of transcription, DNA-templated | 9.93E-05 | GO:0006355 |
| photomorphogenesis | 9.93E-05 | GO:0009640 |
| Antigen processing and presentation | 0.000283669 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.000322033 | KEGG pathway |
| Transcription_related, Transcription factor: Orphans | 0.000593794 | TF family |
| nucleus | 0.001562719 | GO:0005634 |
| mitochondrial inner membrane | 0.001562719 | GO:0005743 |
| protein heterodimerization activity | 0.002009286 | GO:0046982 |
| embryo development ending in seed dormancy | 0.002062664 | GO:0009793 |
| oxidation-reduction process | 0.00211421 | GO:0055114 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.006512876 | ubs family |
| sequence-specific DNA binding | 0.007641331 | GO:0043565 |
| oxidoreductase activity | 0.023905493 | GO:0016491 |
| integral component of membrane | 0.026100395 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014590 | - | - |
| CRO_T016396 | - | - |
| CRO_T018224 | AT3G53340 (2.00E-63) | NF-YB10|nuclear factor Y, subunit B10 |
| CRO_T023432 | AT1G15220 (2.00E-52) | ATCCMH; CCMH|cytochrome c biogenesis protein family |
| CRO_T033695 | AT5G24930 (6.00E-15) | BBX5|B-box domain protein 5; COL4|CONSTANS-like 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000867 | L-histidine biosynthesis L-glutamine degradation I Biosynthesis of amino acids 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity phosphoribosylglycinamide formyltransferase activity oxo-acid-lyase activity transferase activity, transferring pentosyl groups imidazoleglycerol-phosphate synthase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I riboflavin synthase complex tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate mitochondrial proton-transporting ATP synthase complex assembly auxin efflux transmembrane transporter activity flavin biosynthesis I (bacteria and plants) Folate biosynthesis Riboflavin metabolism tetrahydrofolate biosynthesis II 'de novo' IMP biosynthetic process riboflavin biosynthetic process histidine biosynthetic process folic acid-containing compound biosynthetic process auxin homeostasis protein complex cellular amino acid biosynthetic process auxin polar transport auxin-activated signaling pathway ligase activity chloroplast embryo development ending in seed dormancy mitochondrial inner membrane Purine metabolism | details |
| CFinderADM000987 | ELL-EAF complex protein complex Transcription_related, Transcription factor: SBP homogalacturonan degradation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc polygalacturonase activity translation elongation factor activity lyase activity translational elongation mitochondrial inner membrane embryo development ending in seed dormancy extracellular region cell wall organization oxidoreductase activity carbohydrate metabolic process | details |
| CFinderADM001038 | glycylpeptide N-tetradecanoyltransferase activity chlorophyll(ide) b reductase activity chlorophyll cycle regulation of microtubule-based process cytoskeleton-dependent intracellular transport N-terminal peptidyl-glycine N-myristoylation protein localization PSII associated light-harvesting complex II catabolic process ATP-dependent microtubule motor activity, plus-end-directed aminoacyl-tRNA ligase activity tRNA aminoacylation for protein translation chlorophyll catabolic process root development Porphyrin and chlorophyll metabolism Aminoacyl-tRNA biosynthesis microtubule-based movement cytoplasm kinesin complex microtubule binding | details |
| CFinderADM001373 | histidinol-phosphate transaminase activity L-histidine biosynthesis ARF guanyl-nucleotide exchange factor activity L-phenylalanine:2-oxoglutarate aminotransferase activity histidine biosynthetic process regulation of ARF protein signal transduction pollen germination pollen tube protein complex positive regulation of GTPase activity Biosynthesis of amino acids Endocytosis vesicle-mediated transport embryo development ending in seed dormancy mitochondrial inner membrane pyridoxal phosphate binding trans-Golgi network Ubiquitin_Proteasome_system, E3 adaptor: DWD oxidoreductase activity | details |
| CFinderADM002070 | organic acid transmembrane transport organic acid transmembrane transporter activity translational elongation nucleotidyltransferase activity translation elongation factor activity intracellular signal transduction RNA transport GTPase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding integral component of plasma membrane intracellular | details |
| CFinderADM002219 | DNA catabolic process, endonucleolytic Transcription_related, Transcription regulator: HMG transmembrane receptor protein kinase activity Base excision repair protein complex DNA binding chromosome Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII mitochondrial inner membrane embryo development ending in seed dormancy extracellular region oxidoreductase activity nucleotide binding | details |
| CFinderADM002290 | chlorophyll(ide) b reductase activity chlorophyll cycle UDP-α-D-glucuronate biosynthesis (from myo-inositol) formation of glycosidic bonds, GlycosylTransferases: GTnc response to water Other types of O-glycan biosynthesis proteasome assembly PSII associated light-harvesting complex II catabolic process chlorophyll catabolic process phosphotransferase activity, alcohol group as acceptor vesicle docking integral component of membrane proteasome complex vesicle fusion Porphyrin and chlorophyll metabolism SNARE binding SNAP receptor activity SNARE complex response to stress Pentose and glucuronate interconversions endomembrane system Golgi membrane transferase activity, transferring glycosyl groups cell wall organization intracellular protein transport kinase activity chloroplast thylakoid membrane phosphorylation RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |