CFinderADM002290's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chlorophyll(ide) b reductase activity | 3.40E-05 | GO:0034256 |
| chlorophyll cycle | 3.92E-05 | plantCyc |
| UDP-α-D-glucuronate biosynthesis (from myo-inositol) | 3.92E-05 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 4.89E-05 | cazy family |
| response to water | 5.10E-05 | GO:0009415 |
| Other types of O-glycan biosynthesis | 0.000138295 | KEGG pathway |
| proteasome assembly | 0.000158525 | GO:0043248 |
| PSII associated light-harvesting complex II catabolic process | 0.000158525 | GO:0010304 |
| chlorophyll catabolic process | 0.000279941 | GO:0015996 |
| phosphotransferase activity, alcohol group as acceptor | 0.000372977 | GO:0016773 |
| vesicle docking | 0.000781675 | GO:0048278 |
| integral component of membrane | 0.000812994 | GO:0016021 |
| proteasome complex | 0.001003952 | GO:0000502 |
| vesicle fusion | 0.001484396 | GO:0006906 |
| Porphyrin and chlorophyll metabolism | 0.001506635 | KEGG pathway |
| SNARE binding | 0.002187002 | GO:0000149 |
| SNAP receptor activity | 0.002187002 | GO:0005484 |
| SNARE complex | 0.003391491 | GO:0031201 |
| response to stress | 0.003955932 | GO:0006950 |
| Pentose and glucuronate interconversions | 0.004656621 | KEGG pathway |
| endomembrane system | 0.005389119 | GO:0012505 |
| Golgi membrane | 0.005389119 | GO:0000139 |
| transferase activity, transferring glycosyl groups | 0.007221724 | GO:0016757 |
| cell wall organization | 0.011191547 | GO:0071555 |
| intracellular protein transport | 0.011191547 | GO:0006886 |
| kinase activity | 0.022205363 | GO:0016301 |
| chloroplast thylakoid membrane | 0.024941357 | GO:0009535 |
| phosphorylation | 0.034519263 | GO:0016310 |
| RNA binding | 0.044938023 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004463 | AT3G26580 (9.00E-89) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T006021 | AT5G16830 (9.00E-42) | SYP21|syntaxin of plants 21 |
| CRO_T008149 | AT1G19360 (9.00E-175) | RRA3|reduced residual arabinose 3 |
| CRO_T014590 | - | - |
| CRO_T020393 | AT3G01640 (1.00E-155) | ATGLCAK|GLUCURONOKINASE; GLCAK|glucuronokinase G |
| CRO_T022401 | - | - |
| CRO_T023860 | AT3G18940 (8.00E-90) | clast3-related |
| CRO_T027163 | AT1G64810 (2.00E-84) | APO1|ACCUMULATION OF PHOTOSYSTEM ONE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000767 | chlorophyll(ide) b reductase activity chlorophyll cycle transcription factor activity, transcription factor binding PSII associated light-harvesting complex II catabolic process Transcription_related, Transcription factor: NF-YB protein complex chlorophyll catabolic process regulation of transcription, DNA-templated photomorphogenesis Antigen processing and presentation Porphyrin and chlorophyll metabolism Transcription_related, Transcription factor: Orphans nucleus mitochondrial inner membrane protein heterodimerization activity embryo development ending in seed dormancy oxidation-reduction process Ubiquitin_Proteasome_system, E3 adaptor: DWD sequence-specific DNA binding oxidoreductase activity integral component of membrane | details |
| CFinderADM001038 | glycylpeptide N-tetradecanoyltransferase activity chlorophyll(ide) b reductase activity chlorophyll cycle regulation of microtubule-based process cytoskeleton-dependent intracellular transport N-terminal peptidyl-glycine N-myristoylation protein localization PSII associated light-harvesting complex II catabolic process ATP-dependent microtubule motor activity, plus-end-directed aminoacyl-tRNA ligase activity tRNA aminoacylation for protein translation chlorophyll catabolic process root development Porphyrin and chlorophyll metabolism Aminoacyl-tRNA biosynthesis microtubule-based movement cytoplasm kinesin complex microtubule binding | details |
| CFinderADM001199 | response to water 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: OFP cell wall organization or biogenesis O-acetyltransferase activity response to stress Golgi apparatus nucleic acid binding | details |
| CFinderADM001200 | Other types of O-glycan biosynthesis cellular component organization autophagy formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: OFP Autophagy - animal Protein export transferase activity, transferring glycosyl groups cell wall organization Golgi membrane membrane catalytic activity intracellular membrane-bounded organelle | details |
| CFinderADM001633 | 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity hydroxyisourate hydrolase activity urate degradation to allantoin I purine nucleobase metabolic process allantoin biosynthetic process regulation of cell growth by extracellular stimulus protein homotetramerization formation of glycosidic bonds, GlycosylTransferases: GTnc extrinsic component of cytoplasmic side of plasma membrane maturation of 5.8S rRNA proteasome assembly Other types of O-glycan biosynthesis brassinosteroid mediated signaling pathway maturation of LSU-rRNA proteasome complex cytosol preribosome, large subunit precursor transferase activity, transferring glycosyl groups Peroxisome Golgi membrane transporter activity cell wall organization Purine metabolism nucleolus transport intracellular nucleic acid binding | details |
| CFinderADM001777 | daphnetin modification protein initiator methionine removal metalloaminopeptidase activity sesaminol glucoside biosynthesis response to abscisic acid flavonoid glucuronidation flavonoid biosynthetic process quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc proteolysis intracellular membrane-bounded organelle RNA binding hydrolase activity | details |
| CFinderADM002046 | anion transmembrane transport inorganic phosphate transmembrane transporter activity RNA binding chloroplast thylakoid membrane | details |
| CFinderADM002049 | response to water organonitrogen compound biosynthetic process organic acid biosynthetic process mitochondrial transport L-leucine biosynthesis mitochondrial membrane 2-Oxocarboxylic acid metabolism response to stress oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Transcription_related, Transcription factor: C2H2 Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Golgi apparatus | details |
| CFinderADM002121 | UDP-α-D-glucuronate biosynthesis (from myo-inositol) formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose-phosphate synthase activity proteasome assembly phosphotransferase activity, alcohol group as acceptor sucrose synthase activity sucrose metabolic process sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II vesicle docking vesicle fusion SNAP receptor activity SNARE binding proteasome complex SNARE complex Pentose and glucuronate interconversions Starch and sucrose metabolism endomembrane system intracellular protein transport kinase activity phosphorylation | details |
| CFinderADM002307 | UDP-α-D-glucuronate biosynthesis (from myo-inositol) formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis proteasome assembly phosphotransferase activity, alcohol group as acceptor proteasome complex Pentose and glucuronate interconversions transferase activity, transferring glycosyl groups Golgi membrane cell wall organization kinase activity phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |