CFinderADM000884's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Plant hormone signal transduction | 9.55E-07 | KEGG pathway |
| phosphoglucomutase activity | 1.38E-05 | GO:0004614 |
| detection of gravity | 1.48E-05 | GO:0009590 |
| galactose catabolic process | 1.48E-05 | GO:0019388 |
| GDP-glucose biosynthesis | 7.60E-05 | plantCyc |
| glucose and glucose-1-phosphate degradation | 7.60E-05 | plantCyc |
| UDP-glucose biosynthesis | 7.60E-05 | plantCyc |
| glycogen biosynthetic process | 0.000108615 | GO:0005978 |
| glucose metabolic process | 0.000148019 | GO:0006006 |
| Glycolysis / Gluconeogenesis | 0.000161673 | KEGG pathway |
| starch biosynthetic process | 0.000168661 | GO:0019252 |
| starch biosynthesis | 0.000184517 | plantCyc |
| sucrose biosynthesis II | 0.000189532 | plantCyc |
| stromule | 0.00027565 | GO:0010319 |
| homogalacturonan degradation | 0.000593078 | plantCyc |
| amino acid transmembrane transporter activity | 0.000721303 | GO:0015171 |
| amino acid transmembrane transport | 0.000774494 | GO:0003333 |
| response to auxin | 0.000893739 | GO:0009733 |
| 2-alkenal reductase [NAD(P)] activity | 0.002218979 | GO:0032440 |
| magnesium ion binding | 0.002596756 | GO:0000287 |
| kinase activity | 0.006142973 | GO:0016301 |
| phosphorylation | 0.012860045 | GO:0016310 |
| chloroplast stroma | 0.025943751 | GO:0009570 |
| integral component of membrane | 0.043949623 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002692 | AT1G23190 (0) | PGM3|phosphoglucomutase 3 |
| CRO_T013805 | AT1G77690 (0) | LAX3|like AUX1 3 |
| CRO_T018072 | AT4G34760 (2.00E-46) | SAUR50|SMALL AUXIN UPREGULATED RNA 50 |
| CRO_T024160 | AT3G18050 (4.00E-77) | unknown protein |
| CRO_T028598 | AT3G20820 (4.00E-132) | Leucine-rich repeat (LRR) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000609 | homogalacturonan degradation cellular oxidant detoxification response to oxidative stress extracellular region L-ascorbate degradation V ascorbate glutathione cycle oxidation-reduction process L-ascorbate peroxidase activity heme binding ubiquitin conjugating enzyme binding enzyme inhibitor activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ascorbate and aldarate metabolism polygalacturonase activity protein polyubiquitination negative regulation of catalytic activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process hydrogen peroxide catabolic process metal ion binding peroxidase activity 2-alkenal reductase [NAD(P)] activity ubiquitin protein ligase activity Phenylpropanoid biosynthesis cell wall organization kinase activity carbohydrate metabolic process phosphorylation | details |
| CFinderADM001575 | Protein_kinases_phosphatases, PPC:1.15.2: Leucine Rich Repeat Kinase VI positive regulation of protein export from nucleus galactose catabolic process detection of gravity detection of brassinosteroid stimulus phosphoglucomutase activity Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family root hair cell differentiation GDP-glucose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis glycogen biosynthetic process starch biosynthesis sucrose biosynthesis II brassinosteroid mediated signaling pathway glucose metabolic process leaf morphogenesis starch biosynthetic process multidimensional cell growth Glycolysis / Gluconeogenesis stromule protein autophosphorylation hydrogen peroxide catabolic process response to auxin cellular oxidant detoxification response to oxidative stress Phenylpropanoid biosynthesis peroxidase activity magnesium ion binding ATP binding protein kinase activity extracellular region | details |
Expression profiles
 Show details about module gene expression profiling |