CFinderADM001575's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.15.2: Leucine Rich Repeat Kinase VI | 3.97E-06 | kinase family |
| positive regulation of protein export from nucleus | 3.58E-05 | GO:0046827 |
| galactose catabolic process | 3.58E-05 | GO:0019388 |
| detection of gravity | 3.58E-05 | GO:0009590 |
| detection of brassinosteroid stimulus | 3.58E-05 | GO:0009729 |
| phosphoglucomutase activity | 5.15E-05 | GO:0004614 |
| Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family | 6.93E-05 | kinase family |
| root hair cell differentiation | 7.16E-05 | GO:0048765 |
| GDP-glucose biosynthesis | 0.000120699 | plantCyc |
| glucose and glucose-1-phosphate degradation | 0.000120699 | plantCyc |
| UDP-glucose biosynthesis | 0.000120699 | plantCyc |
| glycogen biosynthetic process | 0.000262075 | GO:0005978 |
| starch biosynthesis | 0.000292931 | plantCyc |
| sucrose biosynthesis II | 0.000300823 | plantCyc |
| brassinosteroid mediated signaling pathway | 0.000309579 | GO:0009742 |
| glucose metabolic process | 0.000357037 | GO:0006006 |
| leaf morphogenesis | 0.000406734 | GO:0009965 |
| starch biosynthetic process | 0.000406734 | GO:0019252 |
| multidimensional cell growth | 0.000453874 | GO:0009825 |
| Glycolysis / Gluconeogenesis | 0.000652179 | KEGG pathway |
| stromule | 0.000865188 | GO:0010319 |
| protein autophosphorylation | 0.002235332 | GO:0046777 |
| hydrogen peroxide catabolic process | 0.002235332 | GO:0042744 |
| response to auxin | 0.002235332 | GO:0009733 |
| cellular oxidant detoxification | 0.005215612 | GO:0098869 |
| response to oxidative stress | 0.005215612 | GO:0006979 |
| Phenylpropanoid biosynthesis | 0.006323936 | KEGG pathway |
| peroxidase activity | 0.010600998 | GO:0004601 |
| magnesium ion binding | 0.010600998 | GO:0000287 |
| ATP binding | 0.025794384 | GO:0005524 |
| protein kinase activity | 0.038840904 | GO:0004672 |
| extracellular region | 0.047029467 | GO:0005576 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002692 | AT1G23190 (0) | PGM3|phosphoglucomutase 3 |
| CRO_T004411 | AT1G06390 (0) | ATSK2-3|A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3; ATSK22|SHAGGY-LIKE PROTEIN KINASE 22; BIL2|BIN2-LIKE 2; GSK1|GSK3/SHAGGY-like protein kinase 1 |
| CRO_T007619 | AT3G03770 (0) | Leucine-rich repeat protein kinase family protein |
| CRO_T011998 | AT5G01090 (3.00E-35) | Concanavalin A-like lectin family protein |
| CRO_T018033 | - | - |
| CRO_T024523 | - | - |
| CRO_T032926 | AT5G40150 (9.00E-66) | Peroxidase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000609 | homogalacturonan degradation cellular oxidant detoxification response to oxidative stress extracellular region L-ascorbate degradation V ascorbate glutathione cycle oxidation-reduction process L-ascorbate peroxidase activity heme binding ubiquitin conjugating enzyme binding enzyme inhibitor activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ascorbate and aldarate metabolism polygalacturonase activity protein polyubiquitination negative regulation of catalytic activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process hydrogen peroxide catabolic process metal ion binding peroxidase activity 2-alkenal reductase [NAD(P)] activity ubiquitin protein ligase activity Phenylpropanoid biosynthesis cell wall organization kinase activity carbohydrate metabolic process phosphorylation | details |
| CFinderADM000686 | glycerol-3-phosphate shuttle Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III 8-amino-7-oxononanoate synthase activity Biotin metabolism sphingomyelin phosphodiesterase activity glycerol-3-phosphate catabolic process biotin biosynthetic process integral component of membrane glycerol-3-phosphate dehydrogenase [NAD+] activity glycerol-3-phosphate dehydrogenase complex Ras signaling pathway carbohydrate metabolic process cellular macromolecule biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: bZIP cytoplasmic, membrane-bounded vesicle beta-galactosidase activity DNA metabolic process carbohydrate transport Glycerophospholipid metabolism proton transport nucleotidyltransferase activity sugar:proton symporter activity small GTPase mediated signal transduction protein homodimerization activity NAD binding organic cyclic compound binding heterocyclic compound binding carbohydrate binding Golgi membrane pyridoxal phosphate binding | details |
| CFinderADM000731 | Herpes simplex infection detection of brassinosteroid stimulus positive regulation of protein export from nucleus root hair cell differentiation brassinosteroid mediated signaling pathway Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ubiquitin_Proteasome_system, E3: RING leaf morphogenesis multidimensional cell growth Phenylpropanoid biosynthesis protein autophosphorylation response to auxin cytosol Transcription_related, Transcription factor: C2H2 coenzyme binding Ubiquitin_Proteasome_system, E3: U-box | details |
| CFinderADM000884 | Plant hormone signal transduction phosphoglucomutase activity detection of gravity galactose catabolic process GDP-glucose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis glycogen biosynthetic process glucose metabolic process Glycolysis / Gluconeogenesis starch biosynthetic process starch biosynthesis sucrose biosynthesis II stromule homogalacturonan degradation amino acid transmembrane transporter activity amino acid transmembrane transport response to auxin 2-alkenal reductase [NAD(P)] activity magnesium ion binding kinase activity phosphorylation chloroplast stroma integral component of membrane | details |
| CFinderADM001261 | Vasopressin-regulated water reabsorption dynein complex Ubiquitin_Proteasome_system, DUB: USP cellular protein metabolic process microtubule-based process translational initiation translation initiation factor activity proteolysis hydrolase activity | details |
| CFinderADM001444 | formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity N-acylphosphatidylethanolamine-specific phospholipase D activity phospholipase D activity phosphatidylcholine metabolic process choline biosynthesis III xyloglucan biosynthesis phosphatidate metabolism, as a signaling molecule phospholipases lipid catabolic process Glycerophospholipid metabolism hydrogen peroxide catabolic process cellular oxidant detoxification response to oxidative stress peroxidase activity Phenylpropanoid biosynthesis calcium ion binding vacuole plastid endoplasmic reticulum membrane extracellular region endoplasmic reticulum heme binding | details |
| CFinderADM001574 | Protein_kinases_phosphatases, PPC:1.15.2: Leucine Rich Repeat Kinase VI homogalacturonan biosynthesis protein phosphorylation pectin biosynthetic process cytoskeletal part microtubule cytoskeleton polygalacturonate 4-alpha-galacturonosyltransferase activity Amino sugar and nucleotide sugar metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII cell wall organization Golgi membrane endosome trans-Golgi network ATP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD protein kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein serine/threonine kinase activity integral component of membrane | details |
| CFinderADM001641 | cellular oxidant detoxification response to oxidative stress L-ascorbate peroxidase activity heme binding L-ascorbate degradation V ascorbate glutathione cycle Ascorbate and aldarate metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB carbohydrate transport proton transport hydrogen peroxide catabolic process sugar:proton symporter activity oxidation-reduction process peroxidase activity Phenylpropanoid biosynthesis anchored component of plasma membrane endosome trans-Golgi network Golgi membrane extracellular region integral component of membrane | details |
| CFinderADM002003 | positive regulation of protein export from nucleus negative regulation of cellular macromolecule biosynthetic process negative regulation of nitrogen compound metabolic process detection of brassinosteroid stimulus production of small RNA involved in gene silencing by RNA regulation of primary metabolic process root hair cell differentiation Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family regulation of gene expression, epigenetic brassinosteroid mediated signaling pathway leaf morphogenesis multidimensional cell growth protein autophosphorylation response to auxin hydrogen peroxide catabolic process Phenylpropanoid biosynthesis response to oxidative stress cellular oxidant detoxification peroxidase activity endoplasmic reticulum membrane extracellular region heme binding | details |
Expression profiles
 Show details about module gene expression profiling |