CFinderADM000895's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| COPII vesicle coat | 9.00E-05 | GO:0030127 |
| chaperone binding | 0.000111705 | GO:0051087 |
| ER to Golgi vesicle-mediated transport | 0.001325043 | GO:0006888 |
| Protein processing in endoplasmic reticulum | 0.0053906 | KEGG pathway |
| intracellular protein transport | 0.005694387 | GO:0006886 |
| transcription, DNA-templated | 0.025990421 | GO:0006351 |
| regulation of transcription, DNA-templated | 0.040793505 | GO:0006355 |
| zinc ion binding | 0.042308805 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003382 | - | - |
| CRO_T006365 | AT2G35470 (4.00E-10) | unknown protein |
| CRO_T007986 | AT5G07220 (7.00E-64) | ATBAG3|BCL-2-associated athanogene 3 |
| CRO_T015100 | AT4G32640 (6.00E-87) | Sec23/Sec24 protein transport family protein |
| CRO_T025212 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000473 | chalcone isomerase activity arogenate dehydratase activity prephenate dehydratase activity L-phenylalanine biosynthetic process L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) receptor signaling protein serine/threonine kinase activity Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) amino acid binding Biosynthesis of amino acids MAPK signaling pathway - plant flavonoid biosynthetic process transcription, DNA-templated chloroplast stroma regulation of transcription, DNA-templated protein phosphorylation | details |
| CFinderADM001032 | negative regulation of translational initiation eukaryotic translation initiation factor 2B complex S-methyl-5-thioribose-1-phosphate isomerase activity guanyl-nucleotide exchange factor activity L-methionine biosynthetic process from methylthioadenosine positive regulation of GTPase activity RNA transport | details |
| CFinderADM001420 | Mitophagy - yeast proteolysis phenylpropanoid biosynthetic process redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 guiding stereospecific synthesis activity microtubule-severing ATPase activity poly(A) RNA binding spliceosomal complex regulation of catalytic activity mRNA splicing, via spliceosome metalloendopeptidase activity ATP-dependent RNA helicase activity copper ion binding serine-type endopeptidase activity Spliceosome Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001836 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase integral component of plasma membrane L-amino acid transport long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay L-alpha-amino acid transmembrane transport sugar mediated signaling pathway COPII vesicle coat response to wounding cytoplasmic mRNA processing body salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cytosol zinc ion binding ER to Golgi vesicle-mediated transport amino acid transmembrane transport defense response to bacterium helicase activity RNA transport intracellular protein transport kinase activity plasmodesma phosphorylation | details |
| CFinderADM001875 | Transcription_related, Transcription regulator: IWS1 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis ATPase activity, coupled to transmembrane movement of substances catalytic activity transcription, DNA-templated transmembrane transport metabolic process | details |
| CFinderADM002274 | Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase COPII vesicle coat viral nucleocapsid intracellular ribonucleoprotein complex RNA processing ER to Golgi vesicle-mediated transport intracellular protein transport Protein processing in endoplasmic reticulum 2-alkenal reductase [NAD(P)] activity protein kinase activity RNA binding protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |