CFinderADM000908's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| fructose 1,6-bisphosphate 1-phosphatase activity | 1.83E-05 | GO:0042132 |
| GTPase activator activity | 0.000151592 | GO:0005096 |
| RNA splicing | 0.000260815 | GO:0008380 |
| Calvin-Benson-Bassham cycle | 0.000535451 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.000535451 | plantCyc |
| gluconeogenesis I | 0.000606396 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.000606396 | plantCyc |
| positive regulation of GTPase activity | 0.000803013 | GO:0043547 |
| dephosphorylation | 0.001960329 | GO:0016311 |
| Endocytosis | 0.003256509 | KEGG pathway |
| carbohydrate metabolic process | 0.010914439 | GO:0005975 |
| Carbon metabolism | 0.011567188 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000985 | AT5G62230 (2.00E-47) | ERL1|ERECTA-like 1 |
| CRO_T007642 | AT1G11380 (4.00E-72) | PLAC8 family protein |
| CRO_T009230 | AT3G54050 (5.00E-74) | HCEF1|high cyclic electron flow 1 |
| CRO_T012719 | AT4G37380 (3.00E-65) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T023674 | AT5G54310 (5.00E-22) | AGD5|ARF-GAP domain 5; NEV|NEVERSHED |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001989 | positive regulation of transcription from RNA polymerase I promoter t-UTP complex 90S preribosome proteasome core complex snoRNA binding threonine-type endopeptidase activity GTPase activator activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) positive regulation of GTPase activity cytoplasm ubiquitin-dependent protein catabolic process small-subunit processome Proteasome Transcription_related, Transcription regulator: SNF2 Endocytosis Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002035 | Transcription_related, Transcription factor: NF-YC membrane fusion Antigen processing and presentation SNARE interactions in vesicular transport metalloendopeptidase activity ATP-dependent peptidase activity SNAP receptor activity microtubule motor activity microtubule binding ATPase activity protein heterodimerization activity kinesin complex microtubule-based movement vesicle-mediated transport embryo development ending in seed dormancy ATP binding intracellular protein transport chloroplast envelope Golgi apparatus proteolysis oxidoreductase activity integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |