CFinderADM002035's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: NF-YC | 2.47E-05 | TF family |
| membrane fusion | 0.000100089 | GO:0061025 |
| Antigen processing and presentation | 0.000241265 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.000241265 | KEGG pathway |
| metalloendopeptidase activity | 0.001109109 | GO:0004222 |
| ATP-dependent peptidase activity | 0.001109109 | GO:0004176 |
| SNAP receptor activity | 0.001109109 | GO:0005484 |
| microtubule motor activity | 0.001109109 | GO:0003777 |
| microtubule binding | 0.001445455 | GO:0008017 |
| ATPase activity | 0.001445455 | GO:0016887 |
| protein heterodimerization activity | 0.001454807 | GO:0046982 |
| kinesin complex | 0.001938612 | GO:0005871 |
| microtubule-based movement | 0.002003412 | GO:0007018 |
| vesicle-mediated transport | 0.003099443 | GO:0016192 |
| embryo development ending in seed dormancy | 0.003151854 | GO:0009793 |
| ATP binding | 0.004516147 | GO:0005524 |
| intracellular protein transport | 0.004768815 | GO:0006886 |
| chloroplast envelope | 0.013968375 | GO:0009941 |
| Golgi apparatus | 0.013968375 | GO:0005794 |
| proteolysis | 0.016649081 | GO:0006508 |
| oxidoreductase activity | 0.028270686 | GO:0016491 |
| integral component of membrane | 0.044701591 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000985 | AT5G62230 (2.00E-47) | ERL1|ERECTA-like 1 |
| CRO_T007272 | AT1G08970 (7.00E-65) | HAP5C|HEME ACTIVATED PROTEIN 5C; NF-YC9|nuclear factor Y, subunit C9 |
| CRO_T012891 | AT1G79560 (0) | EMB1047|EMBRYO DEFECTIVE 1047; EMB156|EMBRYO DEFECTIVE 156; EMB36|EMBRYO DEFECTIVE 36; FTSH12|FTSH protease 12 |
| CRO_T016183 | AT5G65930 (4.00E-87) | KCBP|KINESIN-LIKE CALMODULIN-BINDING PROTEIN; PKCBP|POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN; ZWI|ZWICHEL |
| CRO_T021517 | AT5G39510 (1.00E-68) | ATVTI11|VESICLE TRANSPORT V-SNARE 11; SGR4|SHOOT GRAVITROPSIM 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000854 | UDP-glucuronate biosynthetic process UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-D-xylose biosynthesis UDP-sugars interconversion UDP-glucose 6-dehydrogenase activity microtubule-based movement Glycerophospholipid metabolism kinesin complex Pentose and glucuronate interconversions oxidation-reduction process microtubule motor activity polysaccharide binding NAD binding ATPase activity microtubule binding anchored component of plasma membrane hydrolase activity, hydrolyzing O-glycosyl compounds Ubiquitin_Proteasome_system, E3: RING transferase activity oxidoreductase activity | details |
| CFinderADM000908 | fructose 1,6-bisphosphate 1-phosphatase activity GTPase activator activity RNA splicing Calvin-Benson-Bassham cycle sucrose biosynthesis I (from photosynthesis) gluconeogenesis I glycolysis I (from glucose 6-phosphate) positive regulation of GTPase activity dephosphorylation Endocytosis carbohydrate metabolic process Carbon metabolism | details |
| CFinderADM001566 | acid-amino acid ligase activity ATP binding nucleoid plastid chromosome transcription from plastid promoter chloroplast fission chloroplast regulation of cell shape ATP-dependent peptidase activity metalloendopeptidase activity positive regulation of transcription, DNA-templated RNA secondary structure unwinding cell division biosynthetic process ATP-dependent RNA helicase activity embryo development ending in seed dormancy chloroplast envelope formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: F-box proteolysis nucleic acid binding mitochondrion | details |
| CFinderADM001731 | plastid translation Transcription_related, Transcription factor: NF-YC vitamin E biosynthesis (tocopherols) prenyltransferase activity Antigen processing and presentation Ubiquinone and other terpenoid-quinone biosynthesis protein heterodimerization activity unfolded protein binding chloroplast thylakoid cytosolic small ribosomal subunit protein folding Spliceosome chloroplast envelope Ribosome chloroplast stroma structural constituent of ribosome | details |
| CFinderADM002184 | Longevity regulating pathway - worm mitochondrial inner membrane presequence translocase complex integral component of mitochondrial inner membrane protein import into mitochondrial matrix protein channel activity kinesin complex microtubule-based movement RNA degradation microtubule motor activity microtubule binding ATPase activity oxidoreductase activity | details |
| CFinderADM002221 | Longevity regulating pathway - worm integral component of mitochondrial inner membrane mitochondrial inner membrane presequence translocase complex protein import into mitochondrial matrix protein channel activity kinesin complex Peroxisome single-organism cellular process microtubule-based movement RNA degradation microtubule motor activity microtubule binding ATPase activity oxidoreductase activity | details |
Expression profiles
 Show details about module gene expression profiling |