CFinderADM000938's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: GRAS | 1.67E-06 | TF family |
| beta-pyrazolylalanine synthase activity | 1.79E-05 | GO:0047458 |
| pyrazolylalanine synthase activity | 1.79E-05 | GO:0050234 |
| L-mimosine synthase activity | 1.79E-05 | GO:0050461 |
| regulation of secondary shoot formation | 2.91E-05 | GO:2000032 |
| sequence-specific DNA binding | 4.95E-05 | GO:0043565 |
| L-cysteine biosynthesis I | 9.02E-05 | plantCyc |
| transcription factor activity, transcription factor binding | 0.000100253 | GO:0000989 |
| cysteine synthase activity | 0.000140512 | GO:0004124 |
| transcription factor activity, sequence-specific DNA binding | 0.000140512 | GO:0003700 |
| Transcription_related, Transcription factor: OFP | 0.000186949 | TF family |
| transcription, DNA-templated | 0.000338443 | GO:0006351 |
| cysteine biosynthetic process from serine | 0.000338443 | GO:0006535 |
| nucleus | 0.000379115 | GO:0005634 |
| cellular amino acid biosynthetic process | 0.000909596 | GO:0008652 |
| regulation of transcription, DNA-templated | 0.001202364 | GO:0006355 |
| cytoplasm | 0.004776689 | GO:0005737 |
| serine-type endopeptidase activity | 0.006730575 | GO:0004252 |
| cell wall | 0.016878213 | GO:0005618 |
| Carbon metabolism | 0.033333545 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002482 | AT2G17080 (2.00E-33) | Arabidopsis protein of unknown function (DUF241) |
| CRO_T006332 | AT1G27910 (2.00E-16) | ATPUB45|PLANT U-BOX 45 |
| CRO_T008322 | AT4G14880 (1.00E-90) | OASA1|O-acetylserine (thiol) lyase (OAS-TL) isoform A1; OLD3|ONSET OF LEAF DEATH 3 |
| CRO_T009510 | AT1G66350 (4.00E-63) | RGL1|RGA-like 1 |
| CRO_T011901 | AT5G19650 (1.00E-20) | OFP8|ovate family protein 8 |
| CRO_T015124 | - | - |
| CRO_T015177 | AT5G35450 (2.00E-46) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T022578 | AT3G13840 (3.00E-123) | GRAS family transcription factor |
| CRO_T028020 | AT4G21640 (3.00E-153) | Subtilase family protein |
| CRO_T030889 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000521 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) nucleotide binding Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV response to red light Cul3-RING ubiquitin ligase complex xylogalacturonan biosynthesis Cytochrome_P450, Cytochrome P450: CYP72A phosphotransferase activity, alcohol group as acceptor MAPK signaling pathway secologanin and strictosidine biosynthesis NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB Amino sugar and nucleotide sugar metabolism transferase activity, transferring acyl groups Spliceosome | details |
| CFinderADM000928 | Plant hormone signal transduction MAPK signaling pathway - fly Transcription_related, Transcription factor: ARR-B reactive oxygen species degradation superoxide radicals degradation removal of superoxide radicals superoxide dismutase activity N,N-dimethylaniline monooxygenase activity mitochondrial matrix phosphorelay signal transduction system NADP binding heterocyclic compound binding organic cyclic compound binding flavin adenine dinucleotide binding Ubiquitin_Proteasome_system, E3 adaptor: F-box oxidation-reduction process transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
| CFinderADM001648 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process cullin family protein binding endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit export from nucleus Cul3-RING ubiquitin ligase complex ribosomal large subunit biogenesis preribosome, large subunit precursor ubiquitin-protein transferase activity nucleolus protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001662 | L-mimosine synthase activity N-carbamoylputrescine amidase activity metallocarboxypeptidase activity pyrazolylalanine synthase activity beta-pyrazolylalanine synthase activity putrescine biosynthesis II polyamine biosynthetic process L-cysteine biosynthesis I cysteine synthase activity cysteine biosynthetic process from serine cellular amino acid biosynthetic process Arginine and proline metabolism cell part extracellular space zinc ion binding small GTPase mediated signal transduction GTP binding Carbon metabolism proteolysis Ubiquitin_Proteasome_system, E3: RING intracellular | details |
| CFinderADM001667 | cell division beta-pyrazolylalanine synthase activity L-mimosine synthase activity pyrazolylalanine synthase activity conjugation anaphase-promoting complex binding ubiquitin-protein transferase activator activity cysteine synthase activity L-cysteine biosynthesis I MAP kinase activity cellulose biosynthesis mitotic nuclear division cysteine biosynthetic process from serine cellulose synthase (UDP-forming) activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family formation of glycosidic bonds, GlycosylTransferases: GTnc cellular amino acid biosynthetic process MAPK cascade cellulose biosynthetic process regulation of catalytic activity MAPK signaling pathway - plant Ubiquitin mediated proteolysis cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: DWD transport Carbon metabolism intracellular | details |
| CFinderADM001846 | regulation of protein serine/threonine phosphatase activity abscisic acid binding receptor activity protein phosphatase inhibitor activity abscisic acid-activated signaling pathway negative regulation of catalytic activity organic cyclic compound binding heterocyclic compound binding serine-type endopeptidase activity MAPK signaling pathway - plant Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box cell wall | details |
| CFinderADM001942 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV ABC transporters NF-kappa B signaling pathway ATPase activity, coupled to transmembrane movement of substances adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 transmembrane transport protein kinase activity nucleotide binding | details |
| CFinderADM002074 | formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis drug transmembrane transport heterocyclic compound binding organic cyclic compound binding drug transmembrane transporter activity antiporter activity transferase activity, transferring hexosyl groups transferase activity, transferring glycosyl groups serine-type endopeptidase activity integral component of membrane endoplasmic reticulum membrane cell wall Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |