CFinderADM001662's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-mimosine synthase activity | 8.67E-06 | GO:0050461 |
| N-carbamoylputrescine amidase activity | 8.67E-06 | GO:0050126 |
| metallocarboxypeptidase activity | 8.67E-06 | GO:0004181 |
| pyrazolylalanine synthase activity | 8.67E-06 | GO:0050234 |
| beta-pyrazolylalanine synthase activity | 8.67E-06 | GO:0047458 |
| putrescine biosynthesis II | 4.67E-05 | plantCyc |
| polyamine biosynthetic process | 7.82E-05 | GO:0006596 |
| L-cysteine biosynthesis I | 0.000100898 | plantCyc |
| cysteine synthase activity | 0.00013207 | GO:0004124 |
| cysteine biosynthetic process from serine | 0.000409061 | GO:0006535 |
| cellular amino acid biosynthetic process | 0.000977734 | GO:0008652 |
| Arginine and proline metabolism | 0.001025644 | KEGG pathway |
| cell part | 0.00204536 | GO:0044464 |
| extracellular space | 0.00204536 | GO:0005615 |
| zinc ion binding | 0.002397538 | GO:0008270 |
| small GTPase mediated signal transduction | 0.004363875 | GO:0007264 |
| GTP binding | 0.014714687 | GO:0005525 |
| Carbon metabolism | 0.025120384 | KEGG pathway |
| proteolysis | 0.030586361 | GO:0006508 |
| Ubiquitin_Proteasome_system, E3: RING | 0.037894737 | ubs family |
| intracellular | 0.049675393 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003652 | AT5G42320 (4.00E-151) | Zn-dependent exopeptidases superfamily protein |
| CRO_T004778 | AT2G27450 (1.00E-141) | NLP1|nitrilase-like protein 1 |
| CRO_T005675 | - | - |
| CRO_T008322 | AT4G14880 (1.00E-90) | OASA1|O-acetylserine (thiol) lyase (OAS-TL) isoform A1; OLD3|ONSET OF LEAF DEATH 3 |
| CRO_T012875 | AT1G65020 (2.00E-33) | unknown protein |
| CRO_T019746 | AT5G32440 (5.00E-22) | Ubiquitin system component Cue protein |
| CRO_T022278 | AT4G37880 (2.00E-124) | LisH/CRA/RING-U-box domains-containing protein |
| CRO_T027551 | AT1G05060 (8.00E-09) | unknown protein |
| CRO_T030563 | AT2G24765 (2.00E-42) | ARF3|ADP-ribosylation factor 3; ARL1|ARF-LIKE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000938 | Transcription_related, Transcription factor: GRAS beta-pyrazolylalanine synthase activity pyrazolylalanine synthase activity L-mimosine synthase activity regulation of secondary shoot formation sequence-specific DNA binding L-cysteine biosynthesis I transcription factor activity, transcription factor binding cysteine synthase activity transcription factor activity, sequence-specific DNA binding Transcription_related, Transcription factor: OFP transcription, DNA-templated cysteine biosynthetic process from serine nucleus cellular amino acid biosynthetic process regulation of transcription, DNA-templated cytoplasm serine-type endopeptidase activity cell wall Carbon metabolism | details |
| CFinderADM001295 | 3-dehydroquinate biosynthesis I protein localization to cilium Transcription_related, Transcription factor: TUB cilium phosphatidylinositol binding cell part Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001463 | arogenate dehydratase activity RNA polymerase III core binding prephenate dehydratase activity transcription factor TFIIIB complex assembly negative regulation of transcription from RNA polymerase III promoter L-phenylalanine biosynthetic process L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) amino acid binding cell part Biosynthesis of amino acids small GTPase mediated signal transduction GTP binding transcription, DNA-templated | details |
| CFinderADM001667 | cell division beta-pyrazolylalanine synthase activity L-mimosine synthase activity pyrazolylalanine synthase activity conjugation anaphase-promoting complex binding ubiquitin-protein transferase activator activity cysteine synthase activity L-cysteine biosynthesis I MAP kinase activity cellulose biosynthesis mitotic nuclear division cysteine biosynthetic process from serine cellulose synthase (UDP-forming) activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family formation of glycosidic bonds, GlycosylTransferases: GTnc cellular amino acid biosynthetic process MAPK cascade cellulose biosynthetic process regulation of catalytic activity MAPK signaling pathway - plant Ubiquitin mediated proteolysis cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: DWD transport Carbon metabolism intracellular | details |
| CFinderADM001691 | posttranscriptional regulation of gene expression heat acclimation cell part small GTPase mediated signal transduction catalytic activity GTP binding intracellular | details |
| CFinderADM001811 | metallocarboxypeptidase activity Transcription_related, Transcription regulator: IWS1 clathrin adaptor complex extracellular space cell part Endocytosis biosynthetic process vesicle-mediated transport pyridoxal phosphate binding intracellular protein transport catalytic activity proteolysis | details |
| CFinderADM001825 | metallocarboxypeptidase activity Transcription_related, Transcription regulator: IWS1 clathrin adaptor complex extracellular space Endocytosis biosynthetic process vesicle-mediated transport intracellular protein transport pyridoxal phosphate binding catalytic activity proteolysis integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |