CFinderADM000943's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ABC transporters | 0.000139572 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase | 0.000197047 | kinase family |
| ADP binding | 0.000231872 | GO:0043531 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.000285191 | cazy family |
| ATPase activity, coupled to transmembrane movement of substances | 0.003154097 | GO:0042626 |
| defense response | 0.003789041 | GO:0006952 |
| ATP binding | 0.004162174 | GO:0005524 |
| transmembrane transport | 0.021900732 | GO:0055085 |
| protein serine/threonine kinase activity | 0.026492277 | GO:0004674 |
| protein phosphorylation | 0.043782962 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012613 | AT5G39000 (4.00E-145) | Malectin/receptor-like protein kinase family protein |
| CRO_T015246 | AT3G14470 (1.00E-179) | NB-ARC domain-containing disease resistance protein |
| CRO_T018375 | AT3G62150 (8.00E-90) | ABCB21|ATP-binding cassette B21; PGP21|P-glycoprotein 21 |
| CRO_T019108 | AT3G23570 (2.00E-46) | alpha/beta-Hydrolases superfamily protein |
| CRO_T032733 | AT5G60070 (6.00E-45) | ankyrin repeat family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000211 | ADP binding Ubiquitin_Proteasome_system, DUB: OTU peptidase activity defense response proteolysis | details |
| CFinderADM000944 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ADP binding proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation ATP synthesis coupled proton transport defense response Oxidative phosphorylation | details |
| CFinderADM000998 | Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein phosphorylation protein serine/threonine kinase activity mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) homogalacturonan degradation NAD/NADH phosphorylation and dephosphorylation membrane vacuolar membrane ATP binding phosphorylation protein kinase activity nucleotide binding | details |
| CFinderADM001254 | posttranscriptional gene silencing by RNA organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic mRNA catabolic process production of small RNA involved in gene silencing by RNA ATP-dependent chromatin remodeling rRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic mRNA processing 3'-5'-exoribonuclease activity DNA-dependent ATPase activity nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) proteasome complex endonuclease activity mediator complex Viral carcinogenesis nucleosome rRNA processing Transcription_related, Transcription regulator: SNF2 chromatin binding Proteasome Transcription_related, Transcription factor: HB proteasome-mediated ubiquitin-dependent protein catabolic process RNA degradation vesicle-mediated transport protein heterodimerization activity Plant hormone signal transduction nucleus | details |
| CFinderADM001679 | ADP binding defense response Ribosome structural constituent of ribosome translation | details |
| CFinderADM001733 | generation of catalytic spliceosome for second transesterification step mRNA 3'-splice site recognition response to red light first spliceosomal transesterification activity post-spliceosomal complex Cul3-RING ubiquitin ligase complex post-mRNA release spliceosomal complex catalytic step 1 spliceosome Prp19 complex acetylglucosaminyltransferase activity Viral carcinogenesis nucleosome catalytic step 2 spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB protein heterodimerization activity protein ubiquitination nucleus ubiquitin-protein transferase activity Plant hormone signal transduction Spliceosome | details |
| CFinderADM001942 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV ABC transporters NF-kappa B signaling pathway ATPase activity, coupled to transmembrane movement of substances adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 transmembrane transport protein kinase activity nucleotide binding | details |
| CFinderADM002275 | response to red light Cul3-RING ubiquitin ligase complex glycosyl compound metabolic process acetylglucosaminyltransferase activity beta-glucosidase activity Glycerolipid metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin-protein transferase activity protein ubiquitination carbohydrate metabolic process | details |
| CFinderADM002293 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process ribosomal small subunit assembly beta-glucosidase activity Glycerolipid metabolism cytosolic small ribosomal subunit carbohydrate metabolic process Ribosome translation structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |