CFinderADM001733's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| generation of catalytic spliceosome for second transesterification step | 1.73E-05 | GO:0000350 |
| mRNA 3'-splice site recognition | 1.73E-05 | GO:0000389 |
| response to red light | 3.22E-05 | GO:0010114 |
| first spliceosomal transesterification activity | 4.65E-05 | GO:0000384 |
| post-spliceosomal complex | 6.00E-05 | GO:0071020 |
| Cul3-RING ubiquitin ligase complex | 0.000131652 | GO:0031463 |
| post-mRNA release spliceosomal complex | 0.000131652 | GO:0071014 |
| catalytic step 1 spliceosome | 0.000131652 | GO:0071012 |
| Prp19 complex | 0.000131652 | GO:0000974 |
| acetylglucosaminyltransferase activity | 0.000486519 | GO:0008375 |
| Viral carcinogenesis | 0.000696985 | KEGG pathway |
| nucleosome | 0.000748571 | GO:0000786 |
| catalytic step 2 spliceosome | 0.000748571 | GO:0071013 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001805946 | cazy family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.001805946 | ubs family |
| protein heterodimerization activity | 0.003179333 | GO:0046982 |
| protein ubiquitination | 0.004495775 | GO:0016567 |
| nucleus | 0.005318789 | GO:0005634 |
| ubiquitin-protein transferase activity | 0.005941088 | GO:0004842 |
| Plant hormone signal transduction | 0.010626053 | KEGG pathway |
| Spliceosome | 0.010626053 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004715 | AT1G07790 (1.00E-17) | HTB1|Histone superfamily protein |
| CRO_T014352 | - | - |
| CRO_T018287 | AT2G41760 (2.00E-25) | unknown protein |
| CRO_T022911 | AT3G18790 (3.00E-84) | unknown protein |
| CRO_T024725 | AT2G46260 (0) | LRB1|light-response BTB 1 |
| CRO_T032733 | AT5G60070 (6.00E-45) | ankyrin repeat family protein |
| CRO_T033527 | AT1G10880 (3.00E-112) | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000211 | ADP binding Ubiquitin_Proteasome_system, DUB: OTU peptidase activity defense response proteolysis | details |
| CFinderADM000521 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) nucleotide binding Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV response to red light Cul3-RING ubiquitin ligase complex xylogalacturonan biosynthesis Cytochrome_P450, Cytochrome P450: CYP72A phosphotransferase activity, alcohol group as acceptor MAPK signaling pathway secologanin and strictosidine biosynthesis NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB Amino sugar and nucleotide sugar metabolism transferase activity, transferring acyl groups Spliceosome | details |
| CFinderADM000576 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV response to red light Cul3-RING ubiquitin ligase complex NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB protein ubiquitination transferase activity, transferring acyl groups ubiquitin-protein transferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity nucleotide binding | details |
| CFinderADM000943 | ABC transporters Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase ADP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 ATPase activity, coupled to transmembrane movement of substances defense response ATP binding transmembrane transport protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001254 | posttranscriptional gene silencing by RNA organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic mRNA catabolic process production of small RNA involved in gene silencing by RNA ATP-dependent chromatin remodeling rRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic mRNA processing 3'-5'-exoribonuclease activity DNA-dependent ATPase activity nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) proteasome complex endonuclease activity mediator complex Viral carcinogenesis nucleosome rRNA processing Transcription_related, Transcription regulator: SNF2 chromatin binding Proteasome Transcription_related, Transcription factor: HB proteasome-mediated ubiquitin-dependent protein catabolic process RNA degradation vesicle-mediated transport protein heterodimerization activity Plant hormone signal transduction nucleus | details |
| CFinderADM001679 | ADP binding defense response Ribosome structural constituent of ribosome translation | details |
| CFinderADM001772 | proteasome assembly proteasome regulatory particle, lid subcomplex spliceosomal complex assembly prespliceosome Prp19 complex catalytic step 1 spliceosome post-mRNA release spliceosomal complex structural molecule activity acetylglucosaminyltransferase activity precatalytic spliceosome Viral carcinogenesis nucleosome catalytic step 2 spliceosome Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin-dependent protein catabolic process protein heterodimerization activity nucleus Spliceosome DNA binding cytosol | details |
| CFinderADM002103 | Cul3-RING ubiquitin ligase complex response to red light Transcription_related, Transcription factor: SBP rRNA processing RNA secondary structure unwinding Ubiquitin_Proteasome_system, E3 adaptor: BTB ATP-dependent RNA helicase activity protein ubiquitination ubiquitin-protein transferase activity nucleic acid binding | details |
| CFinderADM002141 | Lysosome transporter activity transport deoxyribonucleoside diphosphate metabolic process ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor mitotic spindle assembly checkpoint deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex regulation of cell cycle nuclear envelope acetylglucosaminyltransferase activity Cell cycle - yeast MAPK signaling pathway Cell cycle multicellular organism development formation of glycosidic bonds, GlycosylTransferases: GTnc cellular process integral component of membrane calcium ion binding Purine metabolism | details |
| CFinderADM002243 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Cul3-RING ubiquitin ligase complex response to red light Transcription_related, Transcription factor: SBP phosphotransferase activity, alcohol group as acceptor nucleotide binding MAPK signaling pathway DNA replication NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: BTB Amino sugar and nucleotide sugar metabolism nucleus protein ubiquitination Plant hormone signal transduction ubiquitin-protein transferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 kinase activity carbohydrate metabolic process phosphorylation protein kinase activity | details |
| CFinderADM002275 | response to red light Cul3-RING ubiquitin ligase complex glycosyl compound metabolic process acetylglucosaminyltransferase activity beta-glucosidase activity Glycerolipid metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin-protein transferase activity protein ubiquitination carbohydrate metabolic process | details |
| CFinderADM002293 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process ribosomal small subunit assembly beta-glucosidase activity Glycerolipid metabolism cytosolic small ribosomal subunit carbohydrate metabolic process Ribosome translation structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |