CFinderADM000992's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA cap binding complex | 1.38E-05 | GO:0005845 |
| mRNA (guanine-N7-)-methyltransferase activity | 2.55E-05 | GO:0004482 |
| 7-methylguanosine mRNA capping | 5.36E-05 | GO:0006370 |
| RNA (guanine-N7)-methylation | 6.43E-05 | GO:0036265 |
| homogalacturonan degradation | 0.000286676 | plantCyc |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.000322329 | cazy family |
| translational elongation | 0.000626658 | GO:0006414 |
| cell wall modification | 0.00065897 | GO:0042545 |
| negative regulation of catalytic activity | 0.000672491 | GO:0043086 |
| aspartyl esterase activity | 0.000742987 | GO:0045330 |
| translation elongation factor activity | 0.000742987 | GO:0003746 |
| pectinesterase inhibitor activity | 0.000742987 | GO:0046910 |
| pectin catabolic process | 0.000815167 | GO:0045490 |
| mRNA surveillance pathway | 0.000830859 | KEGG pathway |
| pectinesterase activity | 0.000912695 | GO:0030599 |
| protein serine/threonine phosphatase activity | 0.000932223 | GO:0004722 |
| protein dephosphorylation | 0.00197437 | GO:0006470 |
| GTPase activity | 0.002960384 | GO:0003924 |
| GTP binding | 0.006919844 | GO:0005525 |
| cell wall | 0.01098672 | GO:0005618 |
| intracellular | 0.013880216 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000088 | AT1G02810 (4.00E-78) | Plant invertase/pectin methylesterase inhibitor superfamily |
| CRO_T025655 | AT1G56070 (1.00E-17) | LOS1|LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 |
| CRO_T027762 | AT1G07630 (4.00E-69) | PLL5|pol-like 5 |
| CRO_T031597 | AT3G52210 (1.00E-99) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T033052 | AT3G05240 (1.00E-53) | MEF19|mitochondrial editing factor 19 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000759 | mRNA (guanine-N7-)-methyltransferase activity glucuronosyltransferase activity mRNA cap binding complex regulation of defense response RNA (guanine-N7)-methylation 7-methylguanosine mRNA capping xylan biosynthetic process Hedgehog signaling pathway Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box plant-type secondary cell wall biogenesis Transcription_related, Transcription regulator: TRAF Fatty acid elongation formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity, transferring acyl groups other than amino-acyl groups very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Ubiquitin_Proteasome_system, E3 adaptor: BTB fatty acid biosynthetic process mRNA surveillance pathway Golgi apparatus | details |
| CFinderADM001136 | UMP biosynthesis I pyrimidine ribonucleotide biosynthetic process dihydroorotate dehydrogenase activity tRNA aminoacylation for protein translation 'de novo' pyrimidine nucleobase biosynthetic process aminoacyl-tRNA ligase activity translational elongation Pyrimidine metabolism translation elongation factor activity Aminoacyl-tRNA biosynthesis membrane GTPase activity GTP binding intracellular nucleotide binding mitochondrion | details |
| CFinderADM001212 | Vasopressin-regulated water reabsorption motile cilium dynein complex 90S preribosome oxalate metabolic process microtubule-based process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) translational elongation oxalate decarboxylase activity translation elongation factor activity small-subunit processome GTPase activity nucleolus cell wall transport intracellular GTP binding | details |
| CFinderADM001244 | (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity Elongator holoenzyme complex integral component of chloroplast outer membrane protein tetramerization 'de novo' AMP biosynthetic process amidase activity 'de novo' IMP biosynthetic process inosine-5'-phosphate biosynthesis II superpathway of scopolin and esculin biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor O-methyltransferase activity adenosine ribonucleotides de novo biosynthesis Arginine and proline metabolism phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Transcription_related, Transcription factor: ERF protein dimerization activity Phenylpropanoid biosynthesis Purine metabolism methylation transcription factor activity, sequence-specific DNA binding transcription, DNA-templated nucleic acid binding | details |
| CFinderADM001721 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING zinc ion binding | details |
| CFinderADM001740 | cis-zeatin biosynthesis trans-zeatin biosynthesis tRNA dimethylallyltransferase activity AMP dimethylallyltransferase activity Zeatin biosynthesis Transcription_related, Transcription regulator: mTERF regulation of transcription, DNA-templated cytokinin biosynthetic process tRNA modification translational elongation metal ion transport mitochondrion double-stranded DNA binding translation elongation factor activity Transcription_related, Transcription factor: ERF GTPase activity GTP binding transcription, DNA-templated intracellular transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM002094 | homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 aspartyl esterase activity pectinesterase inhibitor activity pectinesterase activity cell wall modification negative regulation of catalytic activity pectin catabolic process mRNA (guanine-N7-)-methyltransferase activity cell wall serine-type exopeptidase activity mRNA cap binding complex 7-methylguanosine mRNA capping RNA (guanine-N7)-methylation mRNA surveillance pathway serine-type endopeptidase activity proteolysis | details |
| CFinderADM002095 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc regulation of salicylic acid metabolic process root epidermal cell differentiation cell wall macromolecule catabolic process response to nitrate phosphatidate metabolism, as a signaling molecule multidimensional cell growth chitin catabolic process cellulose catabolic process chitinase activity cellulase activity homogalacturonan degradation response to heat cell wall modification response to cytokinin cellulose biosynthetic process response to water deprivation aspartyl esterase activity pectinesterase inhibitor activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 negative regulation of catalytic activity response to salt stress pectinesterase activity pectin catabolic process polysaccharide binding Protein processing in endoplasmic reticulum Golgi apparatus apoplast cell wall hydrolase activity integral component of membrane | details |
| CFinderADM002214 | NatC complex mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity 7-methylguanosine mRNA capping RNA (guanine-N7)-methylation lipid transport Transcription_related, Transcription regulator: GNAT N-terminal protein amino acid acetylation peptide alpha-N-acetyltransferase activity lipid binding mRNA surveillance pathway integral component of membrane | details |
| CFinderADM002222 | mRNA (guanine-N7-)-methyltransferase activity mRNA cap binding complex 7-methylguanosine mRNA capping RNA (guanine-N7)-methylation homogalacturonan degradation aspartyl esterase activity pectinesterase inhibitor activity pectinesterase activity negative regulation of catalytic activity cell wall modification pectin catabolic process mRNA surveillance pathway hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cell wall formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM002231 | Noc2p-Noc3p complex Noc1p-Noc2p complex viral replication complex formation and maintenance formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity xyloglucan biosynthesis protein self-association ribosomal large subunit biogenesis nucleoplasm plant-type vacuole membrane response to oxidative stress cellular oxidant detoxification peroxidase activity nucleolus Golgi apparatus plasmodesma heme binding | details |
Expression profiles
 Show details about module gene expression profiling |