CFinderADM001136's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UMP biosynthesis I | 8.48E-06 | plantCyc |
| pyrimidine ribonucleotide biosynthetic process | 1.03E-05 | GO:0009220 |
| dihydroorotate dehydrogenase activity | 1.76E-05 | GO:0004152 |
| tRNA aminoacylation for protein translation | 3.75E-05 | GO:0006418 |
| 'de novo' pyrimidine nucleobase biosynthetic process | 3.75E-05 | GO:0006207 |
| aminoacyl-tRNA ligase activity | 8.04E-05 | GO:0004812 |
| translational elongation | 0.000224486 | GO:0006414 |
| Pyrimidine metabolism | 0.000410442 | KEGG pathway |
| translation elongation factor activity | 0.00061137 | GO:0003746 |
| Aminoacyl-tRNA biosynthesis | 0.000674465 | KEGG pathway |
| membrane | 0.00256875 | GO:0016020 |
| GTPase activity | 0.003301483 | GO:0003924 |
| GTP binding | 0.007145781 | GO:0005525 |
| intracellular | 0.013932495 | GO:0005622 |
| nucleotide binding | 0.024491631 | GO:0000166 |
| mitochondrion | 0.035128379 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003959 | - | - |
| CRO_T011553 | AT4G25040 (2.00E-18) | Uncharacterised protein family (UPF0497) |
| CRO_T017557 | AT5G23300 (2.00E-107) | PYRD|pyrimidine d |
| CRO_T025655 | AT1G56070 (1.00E-17) | LOS1|LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 |
| CRO_T031758 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000992 | mRNA cap binding complex mRNA (guanine-N7-)-methyltransferase activity 7-methylguanosine mRNA capping RNA (guanine-N7)-methylation homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 translational elongation cell wall modification negative regulation of catalytic activity aspartyl esterase activity translation elongation factor activity pectinesterase inhibitor activity pectin catabolic process mRNA surveillance pathway pectinesterase activity protein serine/threonine phosphatase activity protein dephosphorylation GTPase activity GTP binding cell wall intracellular | details |
| CFinderADM001212 | Vasopressin-regulated water reabsorption motile cilium dynein complex 90S preribosome oxalate metabolic process microtubule-based process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) translational elongation oxalate decarboxylase activity translation elongation factor activity small-subunit processome GTPase activity nucleolus cell wall transport intracellular GTP binding | details |
| CFinderADM001740 | cis-zeatin biosynthesis trans-zeatin biosynthesis tRNA dimethylallyltransferase activity AMP dimethylallyltransferase activity Zeatin biosynthesis Transcription_related, Transcription regulator: mTERF regulation of transcription, DNA-templated cytokinin biosynthetic process tRNA modification translational elongation metal ion transport mitochondrion double-stranded DNA binding translation elongation factor activity Transcription_related, Transcription factor: ERF GTPase activity GTP binding transcription, DNA-templated intracellular transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001968 | negative regulation of nitrogen compound metabolic process negative regulation of cellular macromolecule biosynthetic process production of small RNA involved in gene silencing by RNA regulation of primary metabolic process regulation of gene expression, epigenetic tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity N-acetyltransferase activity Transcription_related, Transcription regulator: GNAT iron-sulfur cluster binding Aminoacyl-tRNA biosynthesis nucleotide binding | details |
| CFinderADM001987 | dihydroorotate dehydrogenase activity transferase activity, transferring pentosyl groups pyrimidine ribonucleotide biosynthetic process folic acid-containing compound biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process UMP biosynthesis I L-histidine biosynthesis L-glutamine degradation I tetrahydrofolate biosynthesis II Folate biosynthesis cellular amino acid biosynthetic process Pyrimidine metabolism amino acid binding ligase activity Biosynthesis of amino acids metabolic process chloroplast thylakoid membrane chloroplast stroma | details |
Expression profiles
 Show details about module gene expression profiling |