CFinderADM001095's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transferase activity, transferring pentosyl groups | 8.78E-06 | GO:0016763 |
| Cellular senescence | 4.32E-05 | KEGG pathway |
| L-glutamine degradation I | 5.00E-05 | plantCyc |
| L-histidine biosynthesis | 5.00E-05 | plantCyc |
| cellular amino acid biosynthetic process | 0.00021748 | GO:0008652 |
| lignin catabolic process | 0.00021748 | GO:0046274 |
| hydroquinone:oxygen oxidoreductase activity | 0.000437451 | GO:0052716 |
| Transcription_related, Transcription factor: C3H | 0.000861707 | TF family |
| oxidoreductase activity, oxidizing metal ions | 0.000875331 | GO:0016722 |
| Biosynthesis of amino acids | 0.001440997 | KEGG pathway |
| Transcription_related, Transcription factor: ERF | 0.001440997 | TF family |
| copper ion binding | 0.002910422 | GO:0005507 |
| protein dimerization activity | 0.002980171 | GO:0046983 |
| apoplast | 0.00312917 | GO:0048046 |
| binding | 0.016294732 | GO:0005488 |
| chloroplast | 0.039999071 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003565 | AT3G17100 (2.00E-41) | AIF3|ATBS1 Interacting Factor 3 |
| CRO_T012004 | AT4G26900 (4.00E-88) | AT-HF|HIS HF |
| CRO_T014132 | AT2G40370 (0) | LAC5|laccase 5 |
| CRO_T025584 | - | - |
| CRO_T028644 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000867 | L-histidine biosynthesis L-glutamine degradation I Biosynthesis of amino acids 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity phosphoribosylglycinamide formyltransferase activity oxo-acid-lyase activity transferase activity, transferring pentosyl groups imidazoleglycerol-phosphate synthase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I riboflavin synthase complex tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate mitochondrial proton-transporting ATP synthase complex assembly auxin efflux transmembrane transporter activity flavin biosynthesis I (bacteria and plants) Folate biosynthesis Riboflavin metabolism tetrahydrofolate biosynthesis II 'de novo' IMP biosynthetic process riboflavin biosynthetic process histidine biosynthetic process folic acid-containing compound biosynthetic process auxin homeostasis protein complex cellular amino acid biosynthetic process auxin polar transport auxin-activated signaling pathway ligase activity chloroplast embryo development ending in seed dormancy mitochondrial inner membrane Purine metabolism | details |
| CFinderADM001788 | transferase activity, transferring pentosyl groups mitochondrial proton-transporting ATP synthase complex assembly L-glutamine degradation I L-histidine biosynthesis fatty-acyl-CoA binding glycerol channel activity water channel activity cellular water homeostasis water transport glycerol transport cellular amino acid biosynthetic process ion transmembrane transport protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Biosynthesis of amino acids ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: U-box vacuole integral component of plasma membrane plasmodesma Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001871 | condensed chromosome kinetochore EKC/KEOPS complex nuclear pore distribution tRNA threonylcarbamoyladenosine modification nuclear pore outer ring transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery chromatin organization RNA export from nucleus glycerol transport water transport cellular water homeostasis structural constituent of nuclear pore nucleocytoplasmic transporter activity protein import into nucleus glycerol channel activity water channel activity ion transmembrane transport RNA secondary structure unwinding ATP-dependent RNA helicase activity RNA transport vacuole protein dimerization activity integral component of plasma membrane plasmodesma hydrolase activity nucleic acid binding regulation of transcription, DNA-templated | details |
| CFinderADM001910 | Transcription_related, Transcription factor: BES1 regulation of alternative mRNA splicing, via spliceosome brassinosteroid mediated signaling pathway seed germination cytoplasmic mRNA processing body Transcription_related, Transcription regulator: mTERF nucleic acid binding RNA secondary structure unwinding ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding Plant hormone signal transduction protein dimerization activity Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001987 | dihydroorotate dehydrogenase activity transferase activity, transferring pentosyl groups pyrimidine ribonucleotide biosynthetic process folic acid-containing compound biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process UMP biosynthesis I L-histidine biosynthesis L-glutamine degradation I tetrahydrofolate biosynthesis II Folate biosynthesis cellular amino acid biosynthetic process Pyrimidine metabolism amino acid binding ligase activity Biosynthesis of amino acids metabolic process chloroplast thylakoid membrane chloroplast stroma | details |
| CFinderADM002039 | transferase activity, transferring pentosyl groups phenylalanyl-tRNA aminoacylation Transcription_related, Transcription factor: NF-YB phenylalanine-tRNA ligase complex RNA binding phenylalanine-tRNA ligase activity L-glutamine degradation I L-histidine biosynthesis fatty-acyl-CoA binding cellular amino acid biosynthetic process Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids protein heterodimerization activity ATP-dependent RNA helicase activity magnesium ion binding nucleus ATP binding | details |
| CFinderADM002241 | proton-transporting ATP synthase complex assembly transferase activity, transferring pentosyl groups L-glutamine degradation I L-histidine biosynthesis peptidyl-lysine monomethylation cellular amino acid biosynthetic process protein processing protein-lysine N-methyltransferase activity Biosynthesis of amino acids Plant-pathogen interaction ATP-dependent RNA helicase activity serine-type endopeptidase activity calcium ion binding RNA binding | details |
| CFinderADM002276 | transferase activity, transferring pentosyl groups folic acid-containing compound biosynthetic process L-glutamine degradation I L-histidine biosynthesis Folate biosynthesis tetrahydrofolate biosynthesis II cellular amino acid biosynthetic process Biosynthesis of amino acids ATP-dependent RNA helicase activity ligase activity RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |