CFinderADM001871's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| condensed chromosome kinetochore | 1.48E-05 | GO:0000777 |
| EKC/KEOPS complex | 1.48E-05 | GO:0000408 |
| nuclear pore distribution | 2.14E-05 | GO:0031081 |
| tRNA threonylcarbamoyladenosine modification | 2.14E-05 | GO:0002949 |
| nuclear pore outer ring | 2.47E-05 | GO:0031080 |
| transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | 2.67E-05 | GO:0000972 |
| chromatin organization | 2.67E-05 | GO:0006325 |
| RNA export from nucleus | 5.12E-05 | GO:0006405 |
| glycerol transport | 0.000186418 | GO:0015793 |
| water transport | 0.000186418 | GO:0006833 |
| cellular water homeostasis | 0.000186418 | GO:0009992 |
| structural constituent of nuclear pore | 0.000192515 | GO:0017056 |
| nucleocytoplasmic transporter activity | 0.000192515 | GO:0005487 |
| protein import into nucleus | 0.000199572 | GO:0006606 |
| glycerol channel activity | 0.000284666 | GO:0015254 |
| water channel activity | 0.000284666 | GO:0015250 |
| ion transmembrane transport | 0.000421615 | GO:0034220 |
| RNA secondary structure unwinding | 0.000554027 | GO:0010501 |
| ATP-dependent RNA helicase activity | 0.001974373 | GO:0004004 |
| RNA transport | 0.002712166 | KEGG pathway |
| vacuole | 0.004648025 | GO:0005773 |
| protein dimerization activity | 0.005034795 | GO:0046983 |
| integral component of plasma membrane | 0.00692761 | GO:0005887 |
| plasmodesma | 0.011450088 | GO:0009506 |
| hydrolase activity | 0.022515058 | GO:0016787 |
| nucleic acid binding | 0.022515058 | GO:0003676 |
| regulation of transcription, DNA-templated | 0.03696196 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001576 | AT4G22720 (2.00E-98) | Actin-like ATPase superfamily protein |
| CRO_T003565 | AT3G17100 (2.00E-41) | AIF3|ATBS1 Interacting Factor 3 |
| CRO_T008045 | AT4G35100 (1.00E-141) | PIP2; 7|PLASMA MEMBRANE INTRINSIC PROTEIN 2; 7; PIP3|plasma membrane intrinsic protein 3; PIP3A|PLASMA MEMBRANE INTRINSIC PROTEIN 3A |
| CRO_T011625 | AT5G60990 (3.00E-38) | DEA(D/H)-box RNA helicase family protein |
| CRO_T019976 | AT2G05120 (0) | Nucleoporin, Nup133/Nup155-like |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001095 | transferase activity, transferring pentosyl groups Cellular senescence L-glutamine degradation I L-histidine biosynthesis cellular amino acid biosynthetic process lignin catabolic process hydroquinone:oxygen oxidoreductase activity Transcription_related, Transcription factor: C3H oxidoreductase activity, oxidizing metal ions Biosynthesis of amino acids Transcription_related, Transcription factor: ERF copper ion binding protein dimerization activity apoplast binding chloroplast | details |
| CFinderADM001195 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc condensed chromosome kinetochore nuclear pore distribution transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery chromatin organization oligosaccharide metabolic process nuclear pore outer ring RNA export from nucleus beta-N-acetylhexosaminidase activity mannosyl-oligosaccharide glucosidase activity nucleocytoplasmic transporter activity protein N-linked glycosylation structural constituent of nuclear pore protein import into nucleus UDP-glucosyltransferase activity N-Glycan biosynthesis Amino sugar and nucleotide sugar metabolism GTPase activity RNA transport GTP binding endoplasmic reticulum membrane carbohydrate metabolic process | details |
| CFinderADM001788 | transferase activity, transferring pentosyl groups mitochondrial proton-transporting ATP synthase complex assembly L-glutamine degradation I L-histidine biosynthesis fatty-acyl-CoA binding glycerol channel activity water channel activity cellular water homeostasis water transport glycerol transport cellular amino acid biosynthetic process ion transmembrane transport protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Biosynthesis of amino acids ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: U-box vacuole integral component of plasma membrane plasmodesma Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001910 | Transcription_related, Transcription factor: BES1 regulation of alternative mRNA splicing, via spliceosome brassinosteroid mediated signaling pathway seed germination cytoplasmic mRNA processing body Transcription_related, Transcription regulator: mTERF nucleic acid binding RNA secondary structure unwinding ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding Plant hormone signal transduction protein dimerization activity Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM002248 | condensed chromosome kinetochore nuclear pore outer ring chromatin organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore distribution Transcription_related, Transcription regulator: SWI/SNF-BAF60b RNA export from nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore protein import into nucleus translational initiation translation initiation factor activity membrane RNA transport regulation of transcription, DNA-templated chloroplast | details |
Expression profiles
 Show details about module gene expression profiling |