CFinderADM001131's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA re-export from nucleus | 1.76E-05 | GO:0071528 |
| nucleobase-containing compound transmembrane transporter activity | 2.15E-05 | GO:0015932 |
| meristem initiation | 3.07E-05 | GO:0010014 |
| xylogalacturonan biosynthesis | 6.49E-05 | plantCyc |
| nuclear matrix | 0.000100089 | GO:0016363 |
| positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 0.000116819 | GO:0032436 |
| tRNA binding | 0.000142805 | GO:0000049 |
| ubiquitin conjugating enzyme binding | 0.000142805 | GO:0031624 |
| Transcription_related, Transcription factor: NF-YC | 0.000179076 | TF family |
| Ran GTPase binding | 0.000225561 | GO:0008536 |
| flower development | 0.000255828 | GO:0009908 |
| protein polyubiquitination | 0.000326749 | GO:0000209 |
| nuclear pore | 0.000328036 | GO:0005643 |
| ubiquitin ligase complex | 0.000328036 | GO:0000151 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000535451 | cazy family |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000593078 | GO:0042787 |
| protein heterodimerization activity | 0.001473739 | GO:0046982 |
| ubiquitin protein ligase activity | 0.002514778 | GO:0061630 |
| RNA transport | 0.002712166 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.016999371 | ubs family |
| integral component of membrane | 0.039032158 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009496 | AT3G48590 (2.00E-63) | NF-YC1|nuclear factor Y, subunit C1 |
| CRO_T012612 | AT4G40045 (1.00E-11) | unknown protein |
| CRO_T013360 | AT3G16010 (8.00E-42) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T015775 | AT5G19670 (1.00E-147) | Exostosin family protein |
| CRO_T027607 | AT1G72560 (0) | PSD|PAUSED |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000708 | Transcription_related, Transcription factor: NF-YC protein heterodimerization activity nucleic acid binding | details |
| CFinderADM000865 | COPII vesicle coat voltage-gated chloride channel activity ubiquitin ligase complex protein serine/threonine kinase activity ubiquitin conjugating enzyme binding chloride transport Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase positive regulation of proteasomal ubiquitin-dependent protein catabolic process regulation of anion transmembrane transport protein phosphorylation ion transmembrane transport unidimensional cell growth protein polyubiquitination ER to Golgi vesicle-mediated transport protein ubiquitination involved in ubiquitin-dependent protein catabolic process zinc ion binding integral component of membrane trans-Golgi network 2-alkenal reductase [NAD(P)] activity ubiquitin protein ligase activity carbohydrate binding intracellular protein transport Protein processing in endoplasmic reticulum kinase activity ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc phosphorylation Ubiquitin_Proteasome_system, E3: RING oxidoreductase activity | details |
| CFinderADM000966 | Transcription_related, Transcription factor: BSD phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) regulation of mitotic cell cycle xenobiotic-transporting ATPase activity regulation of cyclin-dependent protein serine/threonine kinase activity protein tyrosine/serine/threonine phosphatase activity xenobiotic transport xylogalacturonan biosynthesis cellular macromolecule metabolic process peptidyl-tyrosine dephosphorylation nucleic acid metabolic process Transcription_related, Transcription factor: NF-YC protein tyrosine phosphatase activity non-membrane spanning protein tyrosine kinase activity ABC transporters Basal transcription factors peptidyl-tyrosine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Plant-pathogen interaction drug transmembrane transport protein heterodimerization activity endomembrane system nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001276 | Carbon metabolism oxoglutarate dehydrogenase complex Transcription_related, Transcription factor: NF-YC oxoglutarate dehydrogenase (succinyl-transferring) activity glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process 2-oxoglutarate decarboxylation to succinyl-CoA 6-phosphofructokinase activity thiamine pyrophosphate binding tricarboxylic acid cycle glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) protein heterodimerization activity | details |
| CFinderADM001277 | 2-oxoglutarate decarboxylation to succinyl-CoA oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex thiamine pyrophosphate binding Transcription_related, Transcription factor: NF-YC cytosol tricarboxylic acid cycle protein heterodimerization activity Transcription_related, Transcription factor: NAC nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD Carbon metabolism plasmodesma transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001609 | xylogalacturonan biosynthesis positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin conjugating enzyme binding ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING integral component of membrane zinc ion binding | details |
| CFinderADM001610 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin conjugating enzyme binding ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Protein digestion and absorption Ubiquitin_Proteasome_system, E3: RING xylogalacturonan biosynthesis Transcription_related, Transcription factor: NF-YC serine-type peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc zinc ion binding cytoplasm protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity kinase activity phosphorylation proteolysis nucleic acid binding | details |
| CFinderADM001611 | fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate Transcription_related, Transcription factor: NF-YC 6-phosphofructokinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc xylogalacturonan biosynthesis glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) protein heterodimerization activity nucleus Carbon metabolism | details |
| CFinderADM001904 | Transcription_related, Transcription factor: NF-YC nucleus Transcription_related, Transcription factor: NAC protein heterodimerization activity Oxidative phosphorylation transcription, DNA-templated nucleic acid binding regulation of transcription, DNA-templated DNA binding | details |
| CFinderADM001958 | UFM1 hydrolase activity Transcription_related, Transcription factor: NF-YC ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity ubiquitin protein ligase activity kinase activity Ubiquitin_Proteasome_system, E3: RING phosphorylation nucleic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |