CFinderADM001611's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| fructose 6-phosphate metabolic process | 2.16E-05 | GO:0006002 |
| glycolytic process through fructose-6-phosphate | 2.16E-05 | GO:0061615 |
| Transcription_related, Transcription factor: NF-YC | 6.86E-05 | TF family |
| 6-phosphofructokinase activity | 9.39E-05 | GO:0003872 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000205221 | cazy family |
| xylogalacturonan biosynthesis | 0.00031779 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.000546633 | plantCyc |
| glycolysis IV (plant cytosol) | 0.000546633 | plantCyc |
| protein heterodimerization activity | 0.001759775 | GO:0046982 |
| nucleus | 0.002596785 | GO:0005634 |
| Carbon metabolism | 0.008328376 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009496 | AT3G48590 (2.00E-63) | NF-YC1|nuclear factor Y, subunit C1 |
| CRO_T012693 | AT3G14470 (5.00E-71) | NB-ARC domain-containing disease resistance protein |
| CRO_T014418 | AT2G22480 (5.00E-108) | PFK5|phosphofructokinase 5 |
| CRO_T015775 | AT5G19670 (1.00E-147) | Exostosin family protein |
| CRO_T028513 | AT1G67570 (1.00E-129) | Protein of unknown function (DUF3537) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000708 | Transcription_related, Transcription factor: NF-YC protein heterodimerization activity nucleic acid binding | details |
| CFinderADM000966 | Transcription_related, Transcription factor: BSD phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) regulation of mitotic cell cycle xenobiotic-transporting ATPase activity regulation of cyclin-dependent protein serine/threonine kinase activity protein tyrosine/serine/threonine phosphatase activity xenobiotic transport xylogalacturonan biosynthesis cellular macromolecule metabolic process peptidyl-tyrosine dephosphorylation nucleic acid metabolic process Transcription_related, Transcription factor: NF-YC protein tyrosine phosphatase activity non-membrane spanning protein tyrosine kinase activity ABC transporters Basal transcription factors peptidyl-tyrosine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Plant-pathogen interaction drug transmembrane transport protein heterodimerization activity endomembrane system nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001131 | tRNA re-export from nucleus nucleobase-containing compound transmembrane transporter activity meristem initiation xylogalacturonan biosynthesis nuclear matrix positive regulation of proteasomal ubiquitin-dependent protein catabolic process tRNA binding ubiquitin conjugating enzyme binding Transcription_related, Transcription factor: NF-YC Ran GTPase binding flower development protein polyubiquitination nuclear pore ubiquitin ligase complex formation of glycosidic bonds, GlycosylTransferases: GTnc protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein heterodimerization activity ubiquitin protein ligase activity RNA transport Ubiquitin_Proteasome_system, E3: RING integral component of membrane | details |
| CFinderADM001276 | Carbon metabolism oxoglutarate dehydrogenase complex Transcription_related, Transcription factor: NF-YC oxoglutarate dehydrogenase (succinyl-transferring) activity glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process 2-oxoglutarate decarboxylation to succinyl-CoA 6-phosphofructokinase activity thiamine pyrophosphate binding tricarboxylic acid cycle glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) protein heterodimerization activity | details |
| CFinderADM001277 | 2-oxoglutarate decarboxylation to succinyl-CoA oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex thiamine pyrophosphate binding Transcription_related, Transcription factor: NF-YC cytosol tricarboxylic acid cycle protein heterodimerization activity Transcription_related, Transcription factor: NAC nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD Carbon metabolism plasmodesma transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001609 | xylogalacturonan biosynthesis positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin conjugating enzyme binding ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING integral component of membrane zinc ion binding | details |
| CFinderADM001610 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin conjugating enzyme binding ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Protein digestion and absorption Ubiquitin_Proteasome_system, E3: RING xylogalacturonan biosynthesis Transcription_related, Transcription factor: NF-YC serine-type peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc zinc ion binding cytoplasm protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity kinase activity phosphorylation proteolysis nucleic acid binding | details |
| CFinderADM001891 | oxoglutarate dehydrogenase complex nuclear heterochromatin Carbon metabolism regulation of methylation-dependent chromatin silencing maintenance of DNA methylation 2-oxoglutarate decarboxylation to succinyl-CoA glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process oxoglutarate dehydrogenase (succinyl-transferring) activity Arginine and proline metabolism thiamine pyrophosphate binding 6-phosphofructokinase activity L-ascorbic acid binding histone binding tricarboxylic acid cycle endonuclease activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) nucleic acid phosphodiester bond hydrolysis Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination ubiquitin protein ligase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Ubiquitin_Proteasome_system, E3: RING iron ion binding nucleic acid binding | details |
| CFinderADM001904 | Transcription_related, Transcription factor: NF-YC nucleus Transcription_related, Transcription factor: NAC protein heterodimerization activity Oxidative phosphorylation transcription, DNA-templated nucleic acid binding regulation of transcription, DNA-templated DNA binding | details |
| CFinderADM001958 | UFM1 hydrolase activity Transcription_related, Transcription factor: NF-YC ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein heterodimerization activity 2-alkenal reductase [NAD(P)] activity ubiquitin protein ligase activity kinase activity Ubiquitin_Proteasome_system, E3: RING phosphorylation nucleic acid binding | details |
| CFinderADM002052 | Transcription_related, Transcription factor: G2-like plant sterol biosynthesis phosphatidylinositol binding O-acetyltransferase activity cell wall organization or biogenesis transporter activity plasmodesma Golgi apparatus transmembrane transport | details |
Expression profiles
 Show details about module gene expression profiling |