CFinderADM001139's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: Alfin-like | 3.53E-06 | TF family |
| snRNA transcription | 5.13E-06 | GO:0009301 |
| Cajal body | 9.82E-06 | GO:0015030 |
| protein tag | 2.30E-05 | GO:0031386 |
| protein sumoylation | 5.97E-05 | GO:0016925 |
| spliceosomal complex assembly | 5.97E-05 | GO:0000245 |
| histone binding | 0.000265062 | GO:0042393 |
| RNA transport | 0.002712166 | KEGG pathway |
| RNA binding | 0.018157964 | GO:0003723 |
| nucleotide binding | 0.02889556 | GO:0000166 |
| regulation of transcription, DNA-templated | 0.029138218 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008030 | AT3G53270 (5.00E-51) | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein |
| CRO_T009527 | AT4G26840 (1.00E-39) | ATSUMO1|SMALL UBIQUITIN-LIKE MODIFIER 1 |
| CRO_T027827 | - | - |
| CRO_T030946 | AT3G11200 (5.00E-21) | AL2|alfin-like 2 |
| CRO_T031220 | AT5G28390 (9.00E-22) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000009 | RNA transport protein tag long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay sugar mediated signaling pathway protein sumoylation response to wounding salicylic acid mediated signaling pathway Ubiquitin_Proteasome_system, E2: UBC jasmonic acid mediated signaling pathway cytoplasmic mRNA processing body defense response to bacterium helicase activity ATP binding Protein processing in endoplasmic reticulum plasmodesma | details |
| CFinderADM001450 | snRNA transcription regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion regulation of nitric-oxide synthase activity modulation by symbiont of host calcium or calmodulin-mediated signal transduction Transcription_related, Transcription factor: Alfin-like regulation of photomorphogenesis protein tag calcium-mediated signaling protein sumoylation Ras signaling pathway histone binding small GTPase mediated signal transduction zinc ion binding protein binding 2-alkenal reductase [NAD(P)] activity Ubiquitin_Proteasome_system, E3: U-box Endocytosis RNA transport calcium ion binding GTP binding | details |
| CFinderADM001859 | UBC13-MMS2 complex protein tag response to iron ion actin cytoskeleton protein K63-linked ubiquitination postreplication repair root epidermal cell differentiation actin filament depolymerization response to cadmium ion protein sumoylation nucleic acid metabolic process cellular macromolecule metabolic process Ubiquitin_Proteasome_system, E2: UBC Cell cycle - Caulobacter Regulation of actin cytoskeleton actin binding ubiquitin protein ligase binding nucleus unfolded protein binding ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis ligase activity ubiquitin protein ligase activity ATP binding protein folding RNA transport chloroplast regulation of transcription, DNA-templated | details |
| CFinderADM001960 | snRNA transcription cinnamoyl-CoA reductase activity Transcription_related, Transcription factor: Trihelix signal transducer activity coenzyme binding Phenylpropanoid biosynthesis signal transduction defense response anchored component of plasma membrane plasmodesma nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |