CFinderADM001450's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| snRNA transcription | 4.04E-05 | GO:0009301 |
| regulation of calcium or calmodulin-mediated signal transduction in response to host | 4.04E-05 | GO:0075177 |
| detection of calcium ion | 4.04E-05 | GO:0005513 |
| regulation of nitric-oxide synthase activity | 4.04E-05 | GO:0050999 |
| modulation by symbiont of host calcium or calmodulin-mediated signal transduction | 5.38E-05 | GO:0075133 |
| Transcription_related, Transcription factor: Alfin-like | 7.30E-05 | TF family |
| regulation of photomorphogenesis | 0.00012541 | GO:0010099 |
| protein tag | 0.000150821 | GO:0031386 |
| calcium-mediated signaling | 0.000172636 | GO:0019722 |
| protein sumoylation | 0.000261553 | GO:0016925 |
| Ras signaling pathway | 0.001335193 | KEGG pathway |
| histone binding | 0.00173152 | GO:0042393 |
| small GTPase mediated signal transduction | 0.005535918 | GO:0007264 |
| zinc ion binding | 0.008118758 | GO:0008270 |
| protein binding | 0.008603768 | GO:0005515 |
| 2-alkenal reductase [NAD(P)] activity | 0.008603768 | GO:0032440 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.009210063 | ubs family |
| Endocytosis | 0.011886504 | KEGG pathway |
| RNA transport | 0.018143234 | KEGG pathway |
| calcium ion binding | 0.026727802 | GO:0005509 |
| GTP binding | 0.026727802 | GO:0005525 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001583 | AT1G07410 (2.00E-105) | ATRAB-A2B|ARABIDOPSIS RAB GTPASE HOMOLOG A2B; ATRABA2B|RAB GTPase homolog A2B |
| CRO_T002652 | AT3G61780 (5.00E-45) | emb1703|embryo defective 1703 |
| CRO_T003939 | - | - |
| CRO_T008030 | AT3G53270 (5.00E-51) | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein |
| CRO_T009527 | AT4G26840 (1.00E-39) | ATSUMO1|SMALL UBIQUITIN-LIKE MODIFIER 1 |
| CRO_T010906 | - | - |
| CRO_T022555 | AT1G61620 (2.00E-122) | phosphoinositide binding |
| CRO_T023607 | AT1G28280 (3.00E-48) | VQ motif-containing protein |
| CRO_T028555 | AT1G05990 (7.00E-25) | RHS1|ROOT HAIR SPECIFIC 1 |
| CRO_T030946 | AT3G11200 (5.00E-21) | AL2|alfin-like 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000009 | RNA transport protein tag long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay sugar mediated signaling pathway protein sumoylation response to wounding salicylic acid mediated signaling pathway Ubiquitin_Proteasome_system, E2: UBC jasmonic acid mediated signaling pathway cytoplasmic mRNA processing body defense response to bacterium helicase activity ATP binding Protein processing in endoplasmic reticulum plasmodesma | details |
| CFinderADM000065 | regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion peptidase activity, acting on L-amino acid peptides modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis lipid transporter activity calcium-mediated signaling core promoter sequence-specific DNA binding Ubiquitin_Proteasome_system, DUB: ULP lipid transport transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Ras signaling pathway transcription from RNA polymerase II promoter Lysosome 2-alkenal reductase [NAD(P)] activity protein binding protein dimerization activity calcium ion binding | details |
| CFinderADM000551 | UV protection detection of calcium ion error-prone translesion synthesis regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis calcium-mediated signaling response to UV-B Fanconi anemia pathway Ras signaling pathway DNA-directed DNA polymerase activity damaged DNA binding Transcription_related, Transcription factor: HB 2-alkenal reductase [NAD(P)] activity protein binding calcium ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc binding cytosol | details |
| CFinderADM001139 | Transcription_related, Transcription factor: Alfin-like snRNA transcription Cajal body protein tag protein sumoylation spliceosomal complex assembly histone binding RNA transport RNA binding nucleotide binding regulation of transcription, DNA-templated | details |
| CFinderADM001545 | detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 phosphopantetheine binding regulation of photomorphogenesis calcium-mediated signaling Ras signaling pathway homogalacturonan degradation fatty acid biosynthetic process protein binding 2-alkenal reductase [NAD(P)] activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding protein kinase activity protein phosphorylation | details |
| CFinderADM001859 | UBC13-MMS2 complex protein tag response to iron ion actin cytoskeleton protein K63-linked ubiquitination postreplication repair root epidermal cell differentiation actin filament depolymerization response to cadmium ion protein sumoylation nucleic acid metabolic process cellular macromolecule metabolic process Ubiquitin_Proteasome_system, E2: UBC Cell cycle - Caulobacter Regulation of actin cytoskeleton actin binding ubiquitin protein ligase binding nucleus unfolded protein binding ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis ligase activity ubiquitin protein ligase activity ATP binding protein folding RNA transport chloroplast regulation of transcription, DNA-templated | details |
| CFinderADM001929 | GTP binding regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis calcium-mediated signaling Ras signaling pathway Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription factor: MYB-related calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity plasma membrane abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation small GTPase mediated signal transduction Endocytosis calmodulin binding protein binding 2-alkenal reductase [NAD(P)] activity intracellular signal transduction calcium ion binding intracellular nucleotide binding | details |
| CFinderADM001935 | formation of glycosidic bonds, GlycosylTransferases: GTnc detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis calcium-mediated signaling regulation of biological process folic acid-containing compound biosynthetic process Ras signaling pathway 2-alkenal reductase [NAD(P)] activity protein binding calcium ion binding cytosol | details |
| CFinderADM001960 | snRNA transcription cinnamoyl-CoA reductase activity Transcription_related, Transcription factor: Trihelix signal transducer activity coenzyme binding Phenylpropanoid biosynthesis signal transduction defense response anchored component of plasma membrane plasmodesma nucleotide binding | details |
| CFinderADM002029 | regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of photomorphogenesis calcium-mediated signaling spliceosomal complex assembly Mitophagy - yeast U12-type spliceosomal complex U2-type prespliceosome U2 snRNP Ras signaling pathway catalytic step 2 spliceosome mRNA binding microtubule-severing ATPase activity metalloendopeptidase activity small GTPase mediated signal transduction protein binding 2-alkenal reductase [NAD(P)] activity Endocytosis Spliceosome GTP binding calcium ion binding proteolysis intracellular | details |
Expression profiles
 Show details about module gene expression profiling |