CFinderADM001192's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Biosynthesis of amino acids | 8.89E-07 | KEGG pathway |
| S-adenosyl-L-methionine cycle II | 0.000133758 | plantCyc |
| 2'-deoxymugineic acid phytosiderophore biosynthesis | 0.000133758 | plantCyc |
| 3-dehydroquinate biosynthesis I | 0.000133758 | plantCyc |
| L-methionine degradation I (to L-homocysteine) | 0.000133758 | plantCyc |
| L-methionine salvage cycle I (bacteria and plants) | 0.000133758 | plantCyc |
| L-methionine salvage cycle II (plants) | 0.000133758 | plantCyc |
| S-adenosyl-L-methionine biosynthesis | 0.000133758 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase | 0.000135714 | kinase family |
| Transcription_related, Transcription regulator: DDT | 0.000135714 | TF family |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.000139547 | cazy family |
| xylan biosynthesis | 0.000272606 | plantCyc |
| 3-deoxy-7-phosphoheptulonate synthase activity | 0.000315038 | GO:0003849 |
| methionine adenosyltransferase activity | 0.000315038 | GO:0004478 |
| ethylene biosynthesis I (plants) | 0.000531775 | plantCyc |
| cation transport | 0.00057978 | GO:0006812 |
| S-adenosylmethionine biosynthetic process | 0.00057978 | GO:0006556 |
| phosphorylation | 0.00057978 | GO:0016310 |
| central vacuole | 0.000677494 | GO:0042807 |
| aromatic amino acid family biosynthetic process | 0.000772115 | GO:0009073 |
| cellular water homeostasis | 0.000921282 | GO:0009992 |
| one-carbon metabolic process | 0.000921282 | GO:0006730 |
| water transport | 0.000921282 | GO:0006833 |
| cell surface receptor signaling pathway | 0.000921282 | GO:0007166 |
| glycerol transport | 0.000921282 | GO:0015793 |
| solute:proton antiporter activity | 0.001047151 | GO:0015299 |
| water channel activity | 0.00124552 | GO:0015250 |
| glycerol channel activity | 0.00124552 | GO:0015254 |
| nucleotide binding | 0.00124552 | GO:0000166 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001268297 | cazy family |
| cellulose synthase (UDP-forming) activity | 0.00172669 | GO:0016760 |
| response to biotic stimulus | 0.001950763 | GO:0009607 |
| ion transmembrane transport | 0.00212513 | GO:0034220 |
| cellulose biosynthetic process | 0.002549207 | GO:0030244 |
| lyase activity | 0.003997166 | GO:0016829 |
| plant-type vacuole membrane | 0.008031449 | GO:0009705 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.008648696 | kinase family |
| defense response | 0.009870922 | GO:0006952 |
| cell wall organization | 0.017376596 | GO:0071555 |
| integral component of plasma membrane | 0.032861249 | GO:0005887 |
| membrane | 0.032861249 | GO:0016020 |
| protein kinase activity | 0.04952778 | GO:0004672 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000382 | AT4G12750 (0) | Homeodomain-like transcriptional regulator |
| CRO_T000781 | AT4G00820 (3.00E-06) | iqd17|IQ-domain 17 |
| CRO_T006091 | AT5G63930 (3.00E-118) | Leucine-rich repeat protein kinase family protein |
| CRO_T008853 | AT2G13620 (7.00E-105) | ATCHX15|cation/hydrogen exchanger 15; CHX15|CATION/H+ EXCHANGER 15 |
| CRO_T009944 | AT2G36830 (8.00E-89) | GAMMA-TIP|gamma tonoplast intrinsic protein; GAMMA-TIP1|GAMMA TONOPLAST INTRINSIC PROTEIN 1; TIP1; 1|TONOPLAST INTRINSIC PROTEIN 1; 1 |
| CRO_T013591 | AT1G14930 (3.00E-06) | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| CRO_T018454 | AT1G22410 (0) | Class-II DAHP synthetase family protein |
| CRO_T021294 | AT1G02730 (0) | ATCSLD5|cellulose synthase-like D5; CSLD5|CELLULOSE SYNTHASE LIKE D5; SOS6|SALT OVERLY SENSITIVE 6 |
| CRO_T028899 | AT1G21270 (5.00E-169) | WAK2|wall-associated kinase 2 |
| CRO_T030123 | AT1G02500 (0) | SAM-1|S-ADENOSYLMETHIONINE SYNTHETASE-1; SAM1|S-adenosylmethionine synthetase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000449 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase response to chitin Cell cycle ethylene-activated signaling pathway cell surface receptor signaling pathway plasma membrane DNA binding Transcription_related, Transcription factor: ERF defense response serine-type endopeptidase activity ATPase activity, coupled to transmembrane movement of substances adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phosphorylation proteolysis transmembrane transport transcription, DNA-templated | details |
| CFinderADM000990 | xylan biosynthesis oxidoreductase activity, acting on the CH-CH group of donors formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose synthase (UDP-forming) activity cellulose biosynthetic process transporter activity lipid metabolic process cell wall organization transmembrane transport | details |
| CFinderADM001491 | caffeoyl-CoA O-methyltransferase activity anthocyanin-containing compound metabolic process coumarin biosynthetic process 3-deoxy-7-phosphoheptulonate synthase activity shade avoidance entrainment of circadian clock nuclear body photoperiodism, flowering 3-dehydroquinate biosynthesis I regulation of stomatal movement scopoletin biosynthesis response to cadmium ion aromatic amino acid family biosynthetic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process photomorphogenesis Phenylalanine metabolism lignin biosynthetic process chlorogenic acid biosynthesis I phenylpropanoids methylation (ice plant) suberin monomers biosynthesis lyase activity identical protein binding Phenylpropanoid biosynthesis DNA repair Biosynthesis of amino acids Ubiquitin mediated proteolysis nucleus ubiquitin protein ligase activity protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: DWD methylation | details |
| CFinderADM001615 | microtubule response to radiation condensed chromosome Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 Transcription_related, Transcription regulator: DDT Cell cycle - yeast Nucleotide excision repair Phagosome mitotic chromosome condensation Cell cycle - Caulobacter adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 CDP-diacylglycerol biosynthesis I proteolysis cellulose catabolic process microtubule-based process diacylglycerol and triacylglycerol biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc damaged DNA binding structural constituent of cytoskeleton endonuclease activity ATP-dependent peptidase activity cellulase activity Glycerolipid metabolism protein catabolic process mitochondrial matrix kinesin complex microtubule-based movement nucleic acid phosphodiester bond hydrolysis microtubule motor activity DNA repair ATPase activity microtubule binding unfolded protein binding ATP binding cytoplasm protein folding serine-type endopeptidase activity GTPase activity | details |
| CFinderADM001675 | Transcription_related, Transcription regulator: DDT DNA topoisomerase activity RNA binding | details |
| CFinderADM001713 | Phenylpropanoid biosynthesis Cytochrome_P450, Cytochrome P450: CYP98A flavonoid 3'-monooxygenase activity 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity heme binding chlorogenic acid biosynthesis II chlorogenic acid biosynthesis I transmembrane transporter activity lipid binding response to stress plant-type cell wall organization hydrogen peroxide catabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII peroxidase activity membrane plant-type cell wall response to oxidative stress oxidation-reduction process cellular oxidant detoxification extracellular region adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity iron ion binding phosphorylation transmembrane transport nucleotide binding integral component of membrane regulation of transcription, DNA-templated | details |
| CFinderADM002289 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit 3-dehydroquinate biosynthesis I clathrin heavy chain binding ferrochelatase activity 3-deoxy-7-phosphoheptulonate synthase activity clathrin-mediated endocytosis heme biosynthetic process heme biosynthesis I (aerobic) Transcription_related, Transcription regulator: DDT aromatic amino acid family biosynthetic process structural molecule activity lyase activity Porphyrin and chlorophyll metabolism Transcription_related, Transcription factor: bHLH Biosynthesis of amino acids protein dimerization activity intracellular protein transport | details |
Expression profiles
 Show details about module gene expression profiling |