CFinderADM001713's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Phenylpropanoid biosynthesis | 1.89E-07 | KEGG pathway |
| Cytochrome_P450, Cytochrome P450: CYP98A | 1.15E-05 | CYP450 family |
| flavonoid 3'-monooxygenase activity | 1.70E-05 | GO:0016711 |
| 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity | 1.70E-05 | GO:0047083 |
| heme binding | 2.89E-05 | GO:0020037 |
| chlorogenic acid biosynthesis II | 0.000176333 | plantCyc |
| chlorogenic acid biosynthesis I | 0.000250196 | plantCyc |
| transmembrane transporter activity | 0.000789209 | GO:0022857 |
| lipid binding | 0.001062982 | GO:0008289 |
| response to stress | 0.002700667 | GO:0006950 |
| plant-type cell wall organization | 0.002700667 | GO:0009664 |
| hydrogen peroxide catabolic process | 0.002700667 | GO:0042744 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.002704598 | kinase family |
| peroxidase activity | 0.002796925 | GO:0004601 |
| membrane | 0.003154097 | GO:0016020 |
| plant-type cell wall | 0.003154097 | GO:0009505 |
| response to oxidative stress | 0.003626238 | GO:0006979 |
| oxidation-reduction process | 0.003626238 | GO:0055114 |
| cellular oxidant detoxification | 0.003626238 | GO:0098869 |
| extracellular region | 0.0080623 | GO:0005576 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.008988693 | cazy family |
| protein kinase activity | 0.015622899 | GO:0004672 |
| iron ion binding | 0.018290726 | GO:0005506 |
| phosphorylation | 0.022151954 | GO:0016310 |
| transmembrane transport | 0.023432273 | GO:0055085 |
| nucleotide binding | 0.032579058 | GO:0000166 |
| integral component of membrane | 0.032625494 | GO:0016021 |
| regulation of transcription, DNA-templated | 0.049180879 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003363 | AT5G04220 (3.00E-17) | SYT3|synaptotagmin 3 |
| CRO_T006091 | AT5G63930 (3.00E-118) | Leucine-rich repeat protein kinase family protein |
| CRO_T007228 | AT2G40890 (0) | CYP98A3|cytochrome P450, family 98, subfamily A, polypeptide 3 |
| CRO_T020133 | AT1G71695 (3.00E-41) | Peroxidase superfamily protein |
| CRO_T026491 | AT4G38380 (2.00E-120) | MATE efflux family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000147 | Sulfur relay system tRNA modification lipid binding response to stress transferase activity regulation of transcription, DNA-templated | details |
| CFinderADM001192 | Biosynthesis of amino acids S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis 3-dehydroquinate biosynthesis I L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase Transcription_related, Transcription regulator: DDT adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 xylan biosynthesis 3-deoxy-7-phosphoheptulonate synthase activity methionine adenosyltransferase activity ethylene biosynthesis I (plants) cation transport S-adenosylmethionine biosynthetic process phosphorylation central vacuole aromatic amino acid family biosynthetic process cellular water homeostasis one-carbon metabolic process water transport cell surface receptor signaling pathway glycerol transport solute:proton antiporter activity water channel activity glycerol channel activity nucleotide binding formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose synthase (UDP-forming) activity response to biotic stimulus ion transmembrane transport cellulose biosynthetic process lyase activity plant-type vacuole membrane Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII defense response cell wall organization integral component of plasma membrane membrane protein kinase activity | details |
| CFinderADM001215 | CAAX-protein geranylgeranyltransferase activity CAAX-protein geranylgeranyltransferase complex phosphogluconate dehydrogenase (decarboxylating) activity chromosome, centromeric region protein geranylgeranylation mitotic nuclear division diacylglycerol and triacylglycerol biosynthesis lipid binding NAD binding response to water deprivation response to auxin response to stress response to abscisic acid vacuolar membrane | details |
| CFinderADM001411 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 tissue development plant organ development anatomical structure morphogenesis cellular response to stimulus regulation of response to stimulus response to organic substance response to bacterium Ubiquitin_Proteasome_system, DUB: JAMM defense response to other organism response to osmotic stress lipid binding single-organism cellular process response to stress regulation of cellular process Endocytosis MAPK signaling pathway - plant Ubiquitin_Proteasome_system, E3 adaptor: F-box transport regulation of transcription, DNA-templated | details |
| CFinderADM001599 | mitochondrial pyruvate transport signal recognition particle, endoplasmic reticulum targeting signal recognition particle binding 7S RNA binding SRP-dependent cotranslational protein targeting to membrane diacylglycerol and triacylglycerol biosynthesis Protein export acid phosphatase activity lipid binding response to stress mitochondrial inner membrane dephosphorylation regulation of transcription, DNA-templated | details |
| CFinderADM001714 | Transcription_related, Transcription factor: B3 hydrogen peroxide catabolic process plant-type cell wall organization Phenylpropanoid biosynthesis response to oxidative stress cellular oxidant detoxification peroxidase activity plant-type cell wall extracellular region Ubiquitin_Proteasome_system, E3: RING transmembrane transport heme binding | details |
| CFinderADM002198 | Cytochrome_P450, Cytochrome P450: CYP90A anther wall tapetum cell differentiation brassinosteroid biosynthesis I brassinosteroid biosynthesis II glycerophosphodiester phosphodiesterase activity Brassinosteroid biosynthesis positive regulation of flower development pollen exine formation response to UV-B spliceosomal complex cellular transition metal ion homeostasis brassinosteroid homeostasis brassinosteroid biosynthetic process sterol metabolic process metal ion transport mRNA splicing, via spliceosome lipid binding transition metal ion binding response to stress lipid metabolic process Spliceosome monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen iron ion binding heme binding integral component of membrane regulation of transcription, DNA-templated | details |
| CFinderADM002246 | phosphopyruvate hydratase complex signal peptidase complex Estrogen signaling pathway phosphopyruvate hydratase activity protein targeting to ER signal peptide processing FK506 binding chaperone-mediated protein folding glycolytic process protein peptidyl-prolyl isomerization diacylglycerol and triacylglycerol biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Protein export peptidyl-prolyl cis-trans isomerase activity lipid binding response to stress peptidase activity endoplasmic reticulum membrane magnesium ion binding Carbon metabolism regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |