CFinderADM001239's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 1,3-β-D-glucan biosynthesis | 3.20E-05 | plantCyc |
| phospholipid transport | 4.25E-05 | GO:0015914 |
| MicroRNAs in cancer | 5.95E-05 | KEGG pathway |
| COPII vesicle coat | 6.05E-05 | GO:0030127 |
| 1,3-beta-D-glucan synthase complex | 6.05E-05 | GO:0000148 |
| regulation of ARF protein signal transduction | 7.64E-05 | GO:0032012 |
| (1->3)-beta-D-glucan biosynthetic process | 0.000148501 | GO:0006075 |
| ARF guanyl-nucleotide exchange factor activity | 0.000197541 | GO:0005086 |
| ribonuclease III activity | 0.000197541 | GO:0004525 |
| 1,3-beta-D-glucan synthase activity | 0.000197541 | GO:0003843 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.000524709 | GO:0090502 |
| ER to Golgi vesicle-mediated transport | 0.000659286 | GO:0006888 |
| positive regulation of GTPase activity | 0.000665909 | GO:0043547 |
| RNA processing | 0.00092742 | GO:0006396 |
| intracellular protein transport | 0.00354161 | GO:0006886 |
| Protein processing in endoplasmic reticulum | 0.005332728 | KEGG pathway |
| RNA binding | 0.029783526 | GO:0003723 |
| hydrolase activity | 0.03730904 | GO:0016787 |
| nucleotide binding | 0.047324379 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003906 | AT3G43920 (0) | ATDCL3|DICER-LIKE 3 |
| CRO_T009865 | AT1G01960 (0) | EDA10|embryo sac development arrest 10 |
| CRO_T017842 | AT3G44340 (0) | CEF|clone eighty-four |
| CRO_T032496 | AT1G05570 (0) | CALS1|callose synthase 1; GSL6|GLUCAN SYNTHASE-LIKE 6 |
| CRO_T033107 | AT3G13900 (2.00E-35) | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001303 | Non-homologous end-joining cellular response to X-ray cellular response to gamma radiation Ku70:Ku80 complex oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex telomeric DNA binding 2-oxoglutarate decarboxylation to succinyl-CoA double-strand break repair via nonhomologous end joining telomere maintenance cullin deneddylation 1,3-β-D-glucan biosynthesis nuclear chromosome, telomeric region COP9 signalosome ATP-dependent DNA helicase activity (1->3)-beta-D-glucan biosynthetic process thiamine pyrophosphate binding Ubiquitin_Proteasome_system, DUB: JAMM 1,3-beta-D-glucan synthase complex 1,3-beta-D-glucan synthase activity DNA recombination DNA duplex unwinding tricarboxylic acid cycle damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) double-stranded DNA binding response to stimulus coenzyme binding Phenylpropanoid biosynthesis small-subunit processome cytosol nucleolus | details |
Expression profiles
 Show details about module gene expression profiling |