CFinderADM001303's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Non-homologous end-joining | 0.000132442 | KEGG pathway |
| cellular response to X-ray | 0.000307596 | GO:0071481 |
| cellular response to gamma radiation | 0.000307596 | GO:0071480 |
| Ku70:Ku80 complex | 0.0003433 | GO:0043564 |
| oxoglutarate dehydrogenase (succinyl-transferring) activity | 0.0003433 | GO:0004591 |
| oxoglutarate dehydrogenase complex | 0.0003433 | GO:0045252 |
| telomeric DNA binding | 0.0003433 | GO:0042162 |
| 2-oxoglutarate decarboxylation to succinyl-CoA | 0.000499802 | plantCyc |
| double-strand break repair via nonhomologous end joining | 0.000552148 | GO:0006303 |
| telomere maintenance | 0.000552148 | GO:0000723 |
| cullin deneddylation | 0.000552148 | GO:0010388 |
| 1,3-β-D-glucan biosynthesis | 0.000752348 | plantCyc |
| nuclear chromosome, telomeric region | 0.000770298 | GO:0000784 |
| COP9 signalosome | 0.000770298 | GO:0008180 |
| ATP-dependent DNA helicase activity | 0.000822105 | GO:0004003 |
| (1->3)-beta-D-glucan biosynthetic process | 0.001070666 | GO:0006075 |
| thiamine pyrophosphate binding | 0.001128526 | GO:0030976 |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.001162995 | ubs family |
| 1,3-beta-D-glucan synthase complex | 0.001433933 | GO:0000148 |
| 1,3-beta-D-glucan synthase activity | 0.001433933 | GO:0003843 |
| DNA recombination | 0.002470454 | GO:0006310 |
| DNA duplex unwinding | 0.002470454 | GO:0032508 |
| tricarboxylic acid cycle | 0.003340314 | GO:0006099 |
| damaged DNA binding | 0.003395364 | GO:0003684 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.003396509 | GO:0000462 |
| double-stranded DNA binding | 0.0044961 | GO:0003690 |
| response to stimulus | 0.004718103 | GO:0050896 |
| coenzyme binding | 0.006566492 | GO:0050662 |
| Phenylpropanoid biosynthesis | 0.008407865 | KEGG pathway |
| small-subunit processome | 0.01720646 | GO:0032040 |
| cytosol | 0.017840046 | GO:0005829 |
| nucleolus | 0.037730655 | GO:0005730 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002865 | AT5G44740 (1.00E-05) | POLH|Y-family DNA polymerase H |
| CRO_T003051 | AT5G66090 (7.00E-63) | unknown protein |
| CRO_T003405 | AT3G26000 (1.00E-94) | Ribonuclease inhibitor |
| CRO_T010109 | AT1G48050 (6.00E-59) | ATKU80|KU80 HOMOLOG |
| CRO_T012733 | AT4G26430 (7.00E-134) | CSN6B|COP9 signalosome subunit 6B |
| CRO_T014833 | AT2G43650 (1.00E-89) | EMB2777|EMBRYO DEFECTIVE 2777 |
| CRO_T014842 | AT5G36740 (2.00E-104) | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein |
| CRO_T015264 | AT5G10940 (0) | ASG2|ALTERED SEED GERMINATION 2 |
| CRO_T016730 | AT3G04820 (8.00E-09) | Pseudouridine synthase family protein |
| CRO_T017011 | AT3G46630 (2.00E-04) | Protein of unknown function (DUF3223) |
| CRO_T018601 | AT2G33590 (8.00E-114) | CRL1|CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 |
| CRO_T020609 | AT3G04960 (3.00E-24) | Domain of unknown function (DUF3444) |
| CRO_T030462 | AT3G55410 (0) | 2-oxoglutarate dehydrogenase, E1 component |
| CRO_T032496 | AT1G05570 (0) | CALS1|callose synthase 1; GSL6|GLUCAN SYNTHASE-LIKE 6 |
| CRO_T033245 | AT1G43690 (0) | ubiquitin interaction motif-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000139 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
| CFinderADM000237 | Transcription_related, Transcription factor: CPP Non-homologous end-joining Mitophagy - animal Ku70:Ku80 complex clathrin vesicle coat cellular response to gamma radiation cellular response to X-ray telomere maintenance telomeric DNA binding double-strand break repair via nonhomologous end joining nuclear chromosome, telomeric region ATP-dependent DNA helicase activity serine-type peptidase activity DNA recombination DNA duplex unwinding damaged DNA binding double-stranded DNA binding vesicle-mediated transport endomembrane system proteolysis transferase activity binding | details |
| CFinderADM000331 | regulation of biological process single-organism process DNA replication mRNA surveillance pathway DNA-directed RNA polymerase activity transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated | details |
| CFinderADM000353 | COP9 signalosome cullin deneddylation brassinosteroid mediated signaling pathway Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription regulator: SET protein dephosphorylation phosphoprotein phosphatase activity methylation methyltransferase activity transferase activity | details |
| CFinderADM000468 | thiosulfate disproportionation IV (rhodanese) resolution of recombination intermediates Golgi vesicle budding sister chromatid cohesion Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation phospholipid translocation double-strand break repair via homologous recombination COP9 signalosome Smc5-Smc6 complex Sulfur metabolism phospholipid-translocating ATPase activity Phenylpropanoid biosynthesis RNA processing coenzyme binding Golgi membrane Spliceosome trans-Golgi network magnesium ion binding plasmodesma | details |
| CFinderADM000491 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM mRNA processing ATP-dependent helicase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box binding nucleic acid binding | details |
| CFinderADM000651 | Spliceosome peptidyl-lysine methylation Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome protein-lysine N-methyltransferase activity RNA processing nucleus transcription, DNA-templated RNA binding nucleotide binding | details |
| CFinderADM000731 | Herpes simplex infection detection of brassinosteroid stimulus positive regulation of protein export from nucleus root hair cell differentiation brassinosteroid mediated signaling pathway Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ubiquitin_Proteasome_system, E3: RING leaf morphogenesis multidimensional cell growth Phenylpropanoid biosynthesis protein autophosphorylation response to auxin cytosol Transcription_related, Transcription factor: C2H2 coenzyme binding Ubiquitin_Proteasome_system, E3: U-box | details |
| CFinderADM000779 | IMP dehydrogenase activity peptide metabolic process GMP biosynthetic process Ubiquitin_Proteasome_system, DUB: JAMM guanosine ribonucleotides de novo biosynthesis cullin deneddylation adenosine nucleotides degradation I COP9 signalosome protein disulfide isomerase activity formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex cell metalloendopeptidase activity metal ion binding translation initiation factor activity cell redox homeostasis Purine metabolism RNA transport Protein processing in endoplasmic reticulum proteolysis | details |
| CFinderADM000904 | Spliceosome attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation meiotic sister chromatid cohesion, centromeric THO complex part of transcription export complex production of ta-siRNAs involved in RNA interference mRNA export from nucleus mRNA processing Cell cycle spliceosomal complex ATP-dependent helicase activity chromosome poly(A) RNA binding mRNA splicing, via spliceosome ATP-dependent RNA helicase activity ATP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box nucleic acid binding | details |
| CFinderADM001021 | regulation of lipid metabolic process vindoline and vinblastine biosynthesis maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) vesicle-mediated transport small-subunit processome dioxygenase activity nucleolus endoplasmic reticulum | details |
| CFinderADM001239 | 1,3-β-D-glucan biosynthesis phospholipid transport MicroRNAs in cancer COPII vesicle coat 1,3-beta-D-glucan synthase complex regulation of ARF protein signal transduction (1->3)-beta-D-glucan biosynthetic process ARF guanyl-nucleotide exchange factor activity ribonuclease III activity 1,3-beta-D-glucan synthase activity RNA phosphodiester bond hydrolysis, endonucleolytic ER to Golgi vesicle-mediated transport positive regulation of GTPase activity RNA processing intracellular protein transport Protein processing in endoplasmic reticulum RNA binding hydrolase activity nucleotide binding | details |
| CFinderADM001276 | Carbon metabolism oxoglutarate dehydrogenase complex Transcription_related, Transcription factor: NF-YC oxoglutarate dehydrogenase (succinyl-transferring) activity glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process 2-oxoglutarate decarboxylation to succinyl-CoA 6-phosphofructokinase activity thiamine pyrophosphate binding tricarboxylic acid cycle glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) protein heterodimerization activity | details |
| CFinderADM001277 | 2-oxoglutarate decarboxylation to succinyl-CoA oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex thiamine pyrophosphate binding Transcription_related, Transcription factor: NF-YC cytosol tricarboxylic acid cycle protein heterodimerization activity Transcription_related, Transcription factor: NAC nucleus Ubiquitin_Proteasome_system, E3 adaptor: DWD Carbon metabolism plasmodesma transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001413 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM spliceosomal complex mRNA splicing, via spliceosome Spliceosome RNA binding | details |
| CFinderADM001760 | phosphoglycerate kinase activity phosphate-containing compound metabolic process reductive pentose-phosphate cycle inorganic diphosphatase activity glycolytic process Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Phenylpropanoid biosynthesis coenzyme binding heterocyclic compound binding organic cyclic compound binding helicase activity magnesium ion binding catalytic activity Carbon metabolism Oxidative phosphorylation | details |
| CFinderADM001891 | oxoglutarate dehydrogenase complex nuclear heterochromatin Carbon metabolism regulation of methylation-dependent chromatin silencing maintenance of DNA methylation 2-oxoglutarate decarboxylation to succinyl-CoA glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process oxoglutarate dehydrogenase (succinyl-transferring) activity Arginine and proline metabolism thiamine pyrophosphate binding 6-phosphofructokinase activity L-ascorbic acid binding histone binding tricarboxylic acid cycle endonuclease activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) nucleic acid phosphodiester bond hydrolysis Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination ubiquitin protein ligase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Ubiquitin_Proteasome_system, E3: RING iron ion binding nucleic acid binding | details |
| CFinderADM001900 | ureidoglycine aminohydrolase activity purine nucleobase catabolic process allantoin catabolic process ureide catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) Purine metabolism | details |
| CFinderADM002179 | coenzyme binding Transcription_related, Transcription factor: bZIP Phenylpropanoid biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity plasmodesma | details |
Expression profiles
 Show details about module gene expression profiling |