CFinderADM001242's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 7.25E-06 | cazy family |
| Noc2p-Noc3p complex | 1.09E-05 | GO:0030691 |
| Noc1p-Noc2p complex | 1.09E-05 | GO:0030690 |
| superpathway of polyamine biosynthesis II | 2.50E-05 | plantCyc |
| xylem vessel member cell differentiation | 3.12E-05 | GO:0048759 |
| polyamine biosynthetic process | 3.12E-05 | GO:0006596 |
| spermine synthase activity | 3.13E-05 | GO:0016768 |
| thermospermine synthase activity | 3.13E-05 | GO:0010487 |
| spermidine synthase activity | 3.48E-05 | GO:0004766 |
| spermidine biosynthesis I | 3.75E-05 | plantCyc |
| spermine biosynthesis | 3.75E-05 | plantCyc |
| spermine and spermidine degradation III | 5.69E-05 | plantCyc |
| Arginine and proline metabolism | 0.00015988 | KEGG pathway |
| ribosomal large subunit biogenesis | 0.00031698 | GO:0042273 |
| calcium-dependent phospholipid binding | 0.000546352 | GO:0005544 |
| nucleoplasm | 0.000844268 | GO:0005654 |
| auxin polar transport | 0.000868951 | GO:0009926 |
| response to oxidative stress | 0.004110309 | GO:0006979 |
| cellular oxidant detoxification | 0.004110309 | GO:0098869 |
| oxidation-reduction process | 0.004543756 | GO:0055114 |
| transferase activity, transferring glycosyl groups | 0.005026293 | GO:0016757 |
| carbohydrate binding | 0.005026293 | GO:0030246 |
| peroxidase activity | 0.005026293 | GO:0004601 |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 0.006193248 | GO:0004553 |
| nucleolus | 0.008292225 | GO:0005730 |
| calcium ion binding | 0.011818214 | GO:0005509 |
| carbohydrate metabolic process | 0.016409013 | GO:0005975 |
| heme binding | 0.030945397 | GO:0020037 |
| oxidoreductase activity | 0.039276555 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013746 | - | - |
| CRO_T023845 | AT3G13682 (7.00E-23) | LDL2|LSD1-like2 |
| CRO_T023994 | AT3G61300 (0) | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| CRO_T025031 | AT5G19530 (4.00E-145) | ACL5|ACAULIS 5 |
| CRO_T029218 | AT3G23640 (0) | HGL1|heteroglycan glucosidase 1 |
| CRO_T031828 | AT2G18220 (0) | Noc2p family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000180 | thermospermine synthase activity spermine synthase activity superpathway of polyamine biosynthesis II spermidine synthase activity spermidine biosynthesis I spermine biosynthesis xylem vessel member cell differentiation polyamine biosynthetic process cellular transition metal ion homeostasis auxin polar transport transition metal ion binding metal ion transport hydrogen peroxide catabolic process cytoplasm peroxidase activity response to oxidative stress cellular oxidant detoxification MAPK signaling pathway - plant Phenylpropanoid biosynthesis extracellular region heme binding | details |
| CFinderADM000505 | enoyl-[acyl-carrier-protein] reductase (NADH) activity 3-oxo-5-alpha-steroid 4-dehydrogenase activity spermine and spermidine degradation III N-acetyltransferase activity iron-sulfur cluster binding Arginine and proline metabolism Transcription_related, Transcription regulator: GNAT Fatty acid metabolism very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Transcription_related, Transcription factor: C2H2 defense response lipid metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box sequence-specific DNA binding | details |
| CFinderADM000925 | calcium-dependent phospholipid binding transmembrane transporter activity plasma membrane calcium ion binding transmembrane transport cell part integral component of membrane transferase activity, transferring glycosyl groups regulation of cellular process hydrolase activity, hydrolyzing O-glycosyl compounds Plant hormone signal transduction sequence-specific DNA binding endoplasmic reticulum plasmodesma transcription factor activity, sequence-specific DNA binding carbohydrate metabolic process transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001175 | plasmodesma spermine synthase activity thermospermine synthase activity xylem vessel member cell differentiation polyamine biosynthetic process superpathway of polyamine biosynthesis II spermidine synthase activity spermidine biosynthesis I spermine biosynthesis calcium-dependent phospholipid binding plasma membrane cytoplasm transmembrane transporter activity auxin polar transport Ribosome biogenesis in eukaryotes hydrolase activity, hydrolyzing O-glycosyl compounds calcium ion binding endoplasmic reticulum carbohydrate metabolic process transmembrane transport integral component of membrane | details |
| CFinderADM001876 | calcium-dependent phospholipid binding calcium ion binding spermine synthase activity thermospermine synthase activity spermidine synthase activity polyamine biosynthetic process xylem vessel member cell differentiation superpathway of polyamine biosynthesis II spermidine biosynthesis I spermine biosynthesis auxin polar transport plasma membrane transferase activity, transferring glycosyl groups hydrolase activity, hydrolyzing O-glycosyl compounds carbohydrate metabolic process plasmodesma endoplasmic reticulum hydrolase activity integral component of membrane | details |
| CFinderADM002187 | Transcription_related, Transcription regulator: Rcd1-like negative regulation of response to stimulus regulation of photoperiodism, flowering negative regulation of post-embryonic development negative regulation of reproductive process spermine and spermidine degradation III CCR4-NOT core complex mRNA catabolic process cytokinesis shoot system development gene expression negative regulation of translation RNA metabolic process microtubule cytoskeleton organization Transcription_related, Transcription factor: C2C2-Dof cytoplasmic mRNA processing body Arginine and proline metabolism RNA degradation microtubule binding oxidoreductase activity nucleic acid binding | details |
| CFinderADM002217 | mannose-1-phosphate guanylyltransferase (GDP) activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Fructose and mannose metabolism NF-kappa B signaling pathway Phenylpropanoid biosynthesis biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002231 | Noc2p-Noc3p complex Noc1p-Noc2p complex viral replication complex formation and maintenance formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity xyloglucan biosynthesis protein self-association ribosomal large subunit biogenesis nucleoplasm plant-type vacuole membrane response to oxidative stress cellular oxidant detoxification peroxidase activity nucleolus Golgi apparatus plasmodesma heme binding | details |
| CFinderADM002235 | regulation of cell cycle Transcription_related, Transcription regulator: LIM Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase cyclin-dependent protein serine/threonine kinase activity plasma membrane calcium-dependent phospholipid binding RNA degradation carbohydrate binding transferase activity, transferring glycosyl groups adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding integral component of membrane protein phosphorylation | details |
| CFinderADM002278 | L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity calcium-dependent phospholipid binding cellulose synthase (UDP-forming) activity zinc ion binding plasma membrane Transcription_related, Transcription factor: C3H cellulose biosynthetic process transferase activity, transferring glycosyl groups flavin adenine dinucleotide binding cell wall organization calcium ion binding Ubiquitin_Proteasome_system, E3: RING integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |