CFinderADM002278's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-gulonolactone oxidase activity | 6.37E-05 | GO:0050105 |
| D-arabinono-1,4-lactone oxidase activity | 7.64E-05 | GO:0003885 |
| calcium-dependent phospholipid binding | 0.000296721 | GO:0005544 |
| cellulose synthase (UDP-forming) activity | 0.000343762 | GO:0016760 |
| zinc ion binding | 0.000343762 | GO:0008270 |
| plasma membrane | 0.000437692 | GO:0005886 |
| Transcription_related, Transcription factor: C3H | 0.000861707 | TF family |
| cellulose biosynthetic process | 0.000895841 | GO:0030244 |
| transferase activity, transferring glycosyl groups | 0.002737068 | GO:0016757 |
| flavin adenine dinucleotide binding | 0.002785873 | GO:0050660 |
| cell wall organization | 0.003981951 | GO:0071555 |
| calcium ion binding | 0.006392302 | GO:0005509 |
| Ubiquitin_Proteasome_system, E3: RING | 0.016288271 | ubs family |
| integral component of membrane | 0.029410104 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000491 | AT2G21770 (1.00E-79) | CESA9|cellulose synthase A9 |
| CRO_T003602 | AT3G08505 (1.00E-103) | zinc finger (CCCH-type/C3HC4-type RING finger) family protein |
| CRO_T015898 | AT1G32300 (0) | GulLO1|L -gulono-1,4-lactone ( L -GulL) oxidase 1 |
| CRO_T023994 | AT3G61300 (0) | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| CRO_T029955 | AT3G19770 (3.00E-19) | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000829 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V cytosolic proteasome complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process activation of MAPKK activity peptidyl-tyrosine dephosphorylation Proteasome TBP-class protein binding proteasome-activating ATPase activity MAP kinase kinase kinase activity protein tyrosine phosphatase activity Transcription_related, Transcription factor: C2C2-GATA ATP binding MAPK cascade Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular part peptidase activity cellular process Golgi apparatus sequence-specific DNA binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular | details |
| CFinderADM000925 | calcium-dependent phospholipid binding transmembrane transporter activity plasma membrane calcium ion binding transmembrane transport cell part integral component of membrane transferase activity, transferring glycosyl groups regulation of cellular process hydrolase activity, hydrolyzing O-glycosyl compounds Plant hormone signal transduction sequence-specific DNA binding endoplasmic reticulum plasmodesma transcription factor activity, sequence-specific DNA binding carbohydrate metabolic process transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM000968 | cellular response to gravity tubulin complex Phagosome response to cadmium ion cell surface receptor signaling pathway microtubule-based process structural constituent of cytoskeleton plasma membrane microtubule apoplast GTPase activity cAMP-dependent protein kinase activity cell wall GTP binding plasmodesma Insulin signaling pathway Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase exocyst cell wall organization or biogenesis exocytosis protein phosphorylation glycolysis I (from glucose 6-phosphate) O-acetyltransferase activity cytosol polysaccharide binding protein dimerization activity Golgi apparatus adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001019 | protein catabolic process aspartic-type endopeptidase activity proteolysis cellulose synthase (UDP-forming) activity cellulose biosynthetic process RNA degradation cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001242 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Noc2p-Noc3p complex Noc1p-Noc2p complex superpathway of polyamine biosynthesis II xylem vessel member cell differentiation polyamine biosynthetic process spermine synthase activity thermospermine synthase activity spermidine synthase activity spermidine biosynthesis I spermine biosynthesis spermine and spermidine degradation III Arginine and proline metabolism ribosomal large subunit biogenesis calcium-dependent phospholipid binding nucleoplasm auxin polar transport response to oxidative stress cellular oxidant detoxification oxidation-reduction process transferase activity, transferring glycosyl groups carbohydrate binding peroxidase activity hydrolase activity, hydrolyzing O-glycosyl compounds nucleolus calcium ion binding carbohydrate metabolic process heme binding oxidoreductase activity | details |
| CFinderADM001443 | regulation of meristem growth lactate biosynthetic process cellular response to hydrogen peroxide floral organ development cytoskeleton organization methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) Ubiquitin_Proteasome_system, E3 adaptor: Cullin glyoxalase III activity Transcription_related, Transcription factor: C2C2-Dof transmembrane receptor protein tyrosine kinase activity glutamine metabolic process cullin-RING ubiquitin ligase complex phosphatidylcholine acyl editing phospholipases transcription coactivator activity unidimensional cell growth protein serine/threonine kinase activity ubiquitin protein ligase binding actin binding serine-type carboxypeptidase activity peptidyl-tyrosine phosphorylation protein ubiquitination involved in ubiquitin-dependent protein catabolic process regulation of transcription from RNA polymerase II promoter proteolysis involved in cellular protein catabolic process lipid metabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII cytosol ubiquitin protein ligase activity Protein processing in endoplasmic reticulum vacuole | details |
| CFinderADM001876 | calcium-dependent phospholipid binding calcium ion binding spermine synthase activity thermospermine synthase activity spermidine synthase activity polyamine biosynthetic process xylem vessel member cell differentiation superpathway of polyamine biosynthesis II spermidine biosynthesis I spermine biosynthesis auxin polar transport plasma membrane transferase activity, transferring glycosyl groups hydrolase activity, hydrolyzing O-glycosyl compounds carbohydrate metabolic process plasmodesma endoplasmic reticulum hydrolase activity integral component of membrane | details |
| CFinderADM002025 | Transcription_related, Transcription factor: C2C2-Dof regulation of meristem growth floral organ development Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein kinase activity oxidoreductase activity protein phosphorylation | details |
| CFinderADM002104 | mannose-1-phosphate guanylyltransferase (GDP) activity racemase and epimerase activity, acting on carbohydrates and derivatives UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Hedgehog signaling pathway GDP-mannose biosynthesis Transcription_related, Transcription regulator: TRAF UDP-sugars interconversion L-ascorbate biosynthesis I (L-galactose pathway) cellulose synthase (UDP-forming) activity nucleotidyltransferase activity coenzyme binding Fructose and mannose metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB biosynthetic process cellulose biosynthetic process Amino sugar and nucleotide sugar metabolism RNA degradation integral component of membrane cell wall organization carbohydrate metabolic process | details |
| CFinderADM002235 | regulation of cell cycle Transcription_related, Transcription regulator: LIM Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase cyclin-dependent protein serine/threonine kinase activity plasma membrane calcium-dependent phospholipid binding RNA degradation carbohydrate binding transferase activity, transferring glycosyl groups adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding integral component of membrane protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |