CFinderADM001263's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| secondary metabolic process | 1.71E-05 | GO:0019748 |
| ternatin C3 biosynthesis | 1.71E-05 | plantCyc |
| mitochondrial respiratory chain complex I | 1.00E-04 | GO:0005747 |
| ATP synthesis coupled electron transport | 0.000298746 | GO:0042773 |
| aerobic respiration I (cytochrome c) | 0.000420115 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.000420115 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.000420115 | plantCyc |
| 2 iron, 2 sulfur cluster binding | 0.001121046 | GO:0051537 |
| serine-type carboxypeptidase activity | 0.001121046 | GO:0004185 |
| 4 iron, 4 sulfur cluster binding | 0.001172764 | GO:0051539 |
| proteolysis involved in cellular protein catabolic process | 0.001173183 | GO:0051603 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.001222751 | GO:0016747 |
| NADH dehydrogenase (ubiquinone) activity | 0.001759028 | GO:0008137 |
| response to oxidative stress | 0.001879884 | GO:0006979 |
| electron carrier activity | 0.002461084 | GO:0009055 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.005102114 | ubs family |
| Oxidative phosphorylation | 0.006947278 | KEGG pathway |
| chloroplast | 0.032698289 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006182 | AT5G37510 (0) | EMB1467|embryo defective 1467 |
| CRO_T012832 | - | - |
| CRO_T012909 | AT4G15563 (5.00E-15) | unknown protein |
| CRO_T017216 | - | - |
| CRO_T017873 | AT5G09640 (6.00E-136) | SCPL19|serine carboxypeptidase-like 19; SNG2|SINAPOYLGLUCOSE ACCUMULATOR 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000462 | negative regulation of photomorphogenesis short-day photoperiodism, flowering hormone-mediated signaling pathway cotyledon development actin filament depolymerization sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex actin cytoskeleton Ubiquitin_Proteasome_system, E3 adaptor: Cullin photomorphogenesis flower development Regulation of actin cytoskeleton ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding actin binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis ubiquitin protein ligase activity GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM000660 | Transcription_related, Transcription regulator: SOH1 tryptophan catabolic process to kynurenine formaldehyde oxidation II (glutathione-dependent) L-glutamate degradation I ternatin C3 biosynthesis glutamate dehydrogenase [NAD(P)+] activity arylformamidase activity delta4-3-oxosteroid 5beta-reductase activity 3-oxo-5-beta-steroid 4-dehydrogenase activity secondary metabolic process L-alanine degradation II (to D-lactate) 3-beta-hydroxy-delta5-steroid dehydrogenase activity acetaldehyde biosynthesis I cellulose biosynthesis pyruvate fermentation to ethanol II Transcription_related, Transcription factor: HSF cobalt ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) cellular amino acid metabolic process Transcription_related, Transcription factor: WRKY intracellular organelle plastoglobule oxidoreductase activity serine-type carboxypeptidase activity Transcription_related, Transcription factor: C2H2 coenzyme binding transferase activity, transferring acyl groups other than amino-acyl groups ATPase activity proteolysis involved in cellular protein catabolic process oxidation-reduction process vesicle-mediated transport signal transduction | details |
| CFinderADM000719 | 4-aminobutanoate degradation I 4-aminobutanoate degradation IV ternatin C3 biosynthesis secondary metabolic process actin cytoskeleton L-glutamate degradation IV actin filament depolymerization Butanoate metabolism Regulation of actin cytoskeleton Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transaminase activity serine-type carboxypeptidase activity actin binding identical protein binding transferase activity, transferring acyl groups other than amino-acyl groups proteolysis involved in cellular protein catabolic process signal transduction pyridoxal phosphate binding protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001042 | mRNA surveillance pathway 2-oxoglutarate decarboxylation to succinyl-CoA Golgi to plasma membrane protein transport galactolipid biosynthetic process Golgi vesicle docking mRNA transport long-day photoperiodism, flowering RNA splicing, via endonucleolytic cleavage and ligation hydrogen peroxide biosynthetic process primary miRNA processing mRNA cis splicing, via spliceosome nuclear cap binding complex oxoglutarate dehydrogenase (succinyl-transferring) activity RNA cap binding cullin deneddylation Golgi stack calcium-dependent cysteine-type endopeptidase activity COP9 signalosome protein complex membrane coat mitochondrial outer membrane proteolysis thiamine pyrophosphate binding intra-Golgi vesicle-mediated transport structural molecule activity Autophagy - yeast tricarboxylic acid cycle nucleotide binding response to abscisic acid vesicle-mediated transport ATPase activity intracellular protein transport serine-type endopeptidase activity Ribosome Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001264 | pyruvate dehydrogenase complex pyruvate metabolic process secondary metabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV ternatin C3 biosynthesis dihydrolipoyllysine-residue acetyltransferase activity L-glutamate degradation IV pyruvate decarboxylation to acetyl CoA mitochondrial respiratory chain complex I Butanoate metabolism ATP synthesis coupled electron transport NAD/NADH phosphorylation and dephosphorylation mitochondrial matrix aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) transaminase activity serine-type carboxypeptidase activity 2 iron, 2 sulfur cluster binding identical protein binding 4 iron, 4 sulfur cluster binding proteolysis involved in cellular protein catabolic process transferase activity, transferring acyl groups other than amino-acyl groups NADH dehydrogenase (ubiquinone) activity response to oxidative stress electron carrier activity pyridoxal phosphate binding Carbon metabolism Oxidative phosphorylation chloroplast | details |
| CFinderADM001369 | soluble NSF attachment protein activity syntaxin binding membrane fusion ribosome biogenesis Ubiquitin_Proteasome_system, DUB: OTU zinc ion binding Ribosome biogenesis in eukaryotes SNARE complex GTPase activity intracellular protein transport nucleolus vacuolar membrane GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001493 | nucleus cytoplasm calcium ion binding polyubiquitin binding calcium-dependent cysteine-type endopeptidase activity MAPK signaling pathway response to cadmium ion TCA cycle II (plants and fungi) aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity Proteasome phosphoprotein phosphatase activity Plant-pathogen interaction abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation Transcription_related, Transcription factor: GRAS calmodulin binding protein dephosphorylation intracellular signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding proteolysis | details |
| CFinderADM001918 | intracellular protein transport Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase membrane fusion regulation of photomorphogenesis soluble NSF attachment protein activity syntaxin binding COPI vesicle coat Ubiquitin_Proteasome_system, E2: UBC ATP synthesis coupled electron transport mitochondrial respiratory chain complex I structural molecule activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding SNARE complex 4 iron, 4 sulfur cluster binding vesicle-mediated transport Golgi membrane response to oxidative stress NADH dehydrogenase (ubiquinone) activity Ubiquitin mediated proteolysis electron carrier activity ligase activity vacuolar membrane Oxidative phosphorylation | details |
| CFinderADM001919 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase oxoglutarate dehydrogenase (succinyl-transferring) activity 2-oxoglutarate decarboxylation to succinyl-CoA thiamine pyrophosphate binding mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation ATP synthesis coupled electron transport tricarboxylic acid cycle 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding response to oxidative stress NADH dehydrogenase (ubiquinone) activity mRNA surveillance pathway electron carrier activity ligase activity Carbon metabolism Oxidative phosphorylation protein phosphorylation nucleic acid binding nucleotide binding protein serine/threonine kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |