CFinderADM001264's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyruvate dehydrogenase complex | 5.13E-06 | GO:0045254 |
| pyruvate metabolic process | 1.15E-05 | GO:0006090 |
| secondary metabolic process | 1.15E-05 | GO:0019748 |
| 4-aminobutanoate degradation I | 1.42E-05 | plantCyc |
| 4-aminobutanoate degradation IV | 1.42E-05 | plantCyc |
| ternatin C3 biosynthesis | 1.42E-05 | plantCyc |
| dihydrolipoyllysine-residue acetyltransferase activity | 1.91E-05 | GO:0004742 |
| L-glutamate degradation IV | 9.65E-05 | plantCyc |
| pyruvate decarboxylation to acetyl CoA | 0.000101813 | plantCyc |
| mitochondrial respiratory chain complex I | 0.000130408 | GO:0005747 |
| Butanoate metabolism | 0.000138344 | KEGG pathway |
| ATP synthesis coupled electron transport | 0.000268293 | GO:0042773 |
| NAD/NADH phosphorylation and dephosphorylation | 0.000419428 | plantCyc |
| mitochondrial matrix | 0.000441681 | GO:0005759 |
| aerobic respiration III (alternative oxidase pathway) | 0.00049499 | plantCyc |
| aerobic respiration I (cytochrome c) | 0.000522579 | plantCyc |
| transaminase activity | 0.000604584 | GO:0008483 |
| serine-type carboxypeptidase activity | 0.000999811 | GO:0004185 |
| 2 iron, 2 sulfur cluster binding | 0.000999811 | GO:0051537 |
| identical protein binding | 0.001045936 | GO:0042802 |
| 4 iron, 4 sulfur cluster binding | 0.001045936 | GO:0051539 |
| proteolysis involved in cellular protein catabolic process | 0.001185291 | GO:0051603 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.001246306 | GO:0016747 |
| NADH dehydrogenase (ubiquinone) activity | 0.001960999 | GO:0008137 |
| response to oxidative stress | 0.002025905 | GO:0006979 |
| electron carrier activity | 0.002633919 | GO:0009055 |
| pyridoxal phosphate binding | 0.003607771 | GO:0030170 |
| Carbon metabolism | 0.01020226 | KEGG pathway |
| Oxidative phosphorylation | 0.01020226 | KEGG pathway |
| chloroplast | 0.03656336 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005840 | AT1G80600 (3.00E-22) | TUP5|TUMOR PRONE 5; WIN1|HOPW1-1-interacting 1 |
| CRO_T006182 | AT5G37510 (0) | EMB1467|embryo defective 1467 |
| CRO_T012832 | - | - |
| CRO_T017873 | AT5G09640 (6.00E-136) | SCPL19|serine carboxypeptidase-like 19; SNG2|SINAPOYLGLUCOSE ACCUMULATOR 2 |
| CRO_T021091 | AT1G54220 (7.00E-177) | Dihydrolipoamide acetyltransferase, long form protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000462 | negative regulation of photomorphogenesis short-day photoperiodism, flowering hormone-mediated signaling pathway cotyledon development actin filament depolymerization sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex actin cytoskeleton Ubiquitin_Proteasome_system, E3 adaptor: Cullin photomorphogenesis flower development Regulation of actin cytoskeleton ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding actin binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis ubiquitin protein ligase activity GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM000660 | Transcription_related, Transcription regulator: SOH1 tryptophan catabolic process to kynurenine formaldehyde oxidation II (glutathione-dependent) L-glutamate degradation I ternatin C3 biosynthesis glutamate dehydrogenase [NAD(P)+] activity arylformamidase activity delta4-3-oxosteroid 5beta-reductase activity 3-oxo-5-beta-steroid 4-dehydrogenase activity secondary metabolic process L-alanine degradation II (to D-lactate) 3-beta-hydroxy-delta5-steroid dehydrogenase activity acetaldehyde biosynthesis I cellulose biosynthesis pyruvate fermentation to ethanol II Transcription_related, Transcription factor: HSF cobalt ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) cellular amino acid metabolic process Transcription_related, Transcription factor: WRKY intracellular organelle plastoglobule oxidoreductase activity serine-type carboxypeptidase activity Transcription_related, Transcription factor: C2H2 coenzyme binding transferase activity, transferring acyl groups other than amino-acyl groups ATPase activity proteolysis involved in cellular protein catabolic process oxidation-reduction process vesicle-mediated transport signal transduction | details |
| CFinderADM000719 | 4-aminobutanoate degradation I 4-aminobutanoate degradation IV ternatin C3 biosynthesis secondary metabolic process actin cytoskeleton L-glutamate degradation IV actin filament depolymerization Butanoate metabolism Regulation of actin cytoskeleton Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transaminase activity serine-type carboxypeptidase activity actin binding identical protein binding transferase activity, transferring acyl groups other than amino-acyl groups proteolysis involved in cellular protein catabolic process signal transduction pyridoxal phosphate binding protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001164 | pyruvate dehydrogenase complex isocitrate dehydrogenase (NAD+) activity dihydrolipoyllysine-residue acetyltransferase activity pyruvate metabolic process ncRNA processing Carbon metabolism regulation of photomorphogenesis L-glutamine biosynthesis III pyruvate decarboxylation to acetyl CoA TCA cycle II (plants and fungi) Ubiquitin_Proteasome_system, E2: UBC tricarboxylic acid cycle mitochondrial matrix NAD binding magnesium ion binding ligase activity Ubiquitin mediated proteolysis RNA transport | details |
| CFinderADM001263 | secondary metabolic process ternatin C3 biosynthesis mitochondrial respiratory chain complex I ATP synthesis coupled electron transport aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding serine-type carboxypeptidase activity 4 iron, 4 sulfur cluster binding proteolysis involved in cellular protein catabolic process transferase activity, transferring acyl groups other than amino-acyl groups NADH dehydrogenase (ubiquinone) activity response to oxidative stress electron carrier activity Ubiquitin_Proteasome_system, E3 adaptor: F-box Oxidative phosphorylation chloroplast | details |
| CFinderADM001369 | soluble NSF attachment protein activity syntaxin binding membrane fusion ribosome biogenesis Ubiquitin_Proteasome_system, DUB: OTU zinc ion binding Ribosome biogenesis in eukaryotes SNARE complex GTPase activity intracellular protein transport nucleolus vacuolar membrane GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001434 | glutathione-glutaredoxin redox reactions glutathione-disulfide reductase activity glutathione-peroxide redox reactions Carbon metabolism Glutathione metabolism NADP binding glutathione metabolic process cell redox homeostasis cellular oxidant detoxification flavin adenine dinucleotide binding dihydrolipoyllysine-residue acetyltransferase activity pyruvate dehydrogenase complex pyruvate metabolic process oxoglutarate dehydrogenase (succinyl-transferring) activity mannokinase activity glucokinase activity glucose binding 2-oxoglutarate decarboxylation to succinyl-CoA glucose 6-phosphate metabolic process cellular glucose homeostasis pyruvate decarboxylation to acetyl CoA thiamine pyrophosphate binding fructokinase activity carbohydrate phosphorylation tricarboxylic acid cycle glycolytic process mitochondrial matrix Peroxisome oxidation-reduction process cytosol chloroplast | details |
| CFinderADM001503 | Carbon metabolism mitochondrial matrix tricarboxylic acid cycle pyruvate dehydrogenase complex oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase activity citrate (Si)-synthase activity dihydrolipoyllysine-residue acetyltransferase activity citrate metabolic process pyruvate metabolic process glutathione-disulfide reductase activity glucose 6-phosphate metabolic process glucokinase activity glucose binding mannokinase activity cellular glucose homeostasis 4-aminobutanoate degradation I 4-aminobutanoate degradation IV glutathione-glutaredoxin redox reactions Butanoate metabolism 2-oxoglutarate decarboxylation to succinyl-CoA fructokinase activity glutathione-peroxide redox reactions L-glutamate degradation IV pyruvate decarboxylation to acetyl CoA glyoxylate cycle L-glutamine biosynthesis III TCA cycle II (plants and fungi) transaminase activity carbohydrate phosphorylation Glutathione metabolism glycolytic process glutathione metabolic process identical protein binding NADP binding cell redox homeostasis cellular oxidant detoxification flavin adenine dinucleotide binding pyridoxal phosphate binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001918 | intracellular protein transport Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase membrane fusion regulation of photomorphogenesis soluble NSF attachment protein activity syntaxin binding COPI vesicle coat Ubiquitin_Proteasome_system, E2: UBC ATP synthesis coupled electron transport mitochondrial respiratory chain complex I structural molecule activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding SNARE complex 4 iron, 4 sulfur cluster binding vesicle-mediated transport Golgi membrane response to oxidative stress NADH dehydrogenase (ubiquinone) activity Ubiquitin mediated proteolysis electron carrier activity ligase activity vacuolar membrane Oxidative phosphorylation | details |
| CFinderADM001919 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase oxoglutarate dehydrogenase (succinyl-transferring) activity 2-oxoglutarate decarboxylation to succinyl-CoA thiamine pyrophosphate binding mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation ATP synthesis coupled electron transport tricarboxylic acid cycle 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding response to oxidative stress NADH dehydrogenase (ubiquinone) activity mRNA surveillance pathway electron carrier activity ligase activity Carbon metabolism Oxidative phosphorylation protein phosphorylation nucleic acid binding nucleotide binding protein serine/threonine kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |