CFinderADM001333's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| extrinsic component of plastid membrane | 1.28E-05 | GO:0035452 |
| short-day photoperiodism, flowering | 2.37E-05 | GO:0048575 |
| negative regulation of photomorphogenesis | 2.37E-05 | GO:0010100 |
| hormone-mediated signaling pathway | 2.37E-05 | GO:0009755 |
| cotyledon development | 2.67E-05 | GO:0048825 |
| sugar mediated signaling pathway | 6.52E-05 | GO:0010182 |
| chloroplast fission | 6.52E-05 | GO:0010020 |
| Ubiquitin_Proteasome_system, E3 adaptor: Cullin | 6.86E-05 | ubs family |
| chloroplast outer membrane | 0.000128721 | GO:0009707 |
| Cul4-RING E3 ubiquitin ligase complex | 0.000128721 | GO:0080008 |
| photomorphogenesis | 0.000138062 | GO:0009640 |
| protein self-association | 0.000192873 | GO:0043621 |
| flower development | 0.000311289 | GO:0009908 |
| protein polyubiquitination | 0.000441762 | GO:0000209 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000865982 | GO:0042787 |
| Ubiquitin mediated proteolysis | 0.001015836 | KEGG pathway |
| ubiquitin protein ligase binding | 0.001022995 | GO:0031625 |
| DNA repair | 0.001375028 | GO:0006281 |
| ubiquitin protein ligase activity | 0.00356655 | GO:0061630 |
| GTPase activity | 0.00356655 | GO:0003924 |
| transporter activity | 0.004102625 | GO:0005215 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.005742598 | ubs family |
| transport | 0.007436208 | GO:0006810 |
| intracellular | 0.014834887 | GO:0005622 |
| chloroplast stroma | 0.017967172 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013178 | AT1G75010 (9.00E-08) | ARC3|ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 |
| CRO_T013194 | AT4G09160 (2.00E-169) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| CRO_T016586 | AT1G26830 (5.00E-52) | ATCUL3|cullin 3; ATCUL3A|cullin 3A |
| CRO_T016593 | AT4G02730 (3.00E-20) | WDR5b|human WDR5 (WD40 repeat) homolog b |
| CRO_T031296 | AT4G04180 (7.00E-17) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000462 | negative regulation of photomorphogenesis short-day photoperiodism, flowering hormone-mediated signaling pathway cotyledon development actin filament depolymerization sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex actin cytoskeleton Ubiquitin_Proteasome_system, E3 adaptor: Cullin photomorphogenesis flower development Regulation of actin cytoskeleton ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding actin binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis ubiquitin protein ligase activity GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM000592 | formation of glycosidic bonds, GlycosylTransferases: GTnc lipid binding transferase activity, transferring glycosyl groups | details |
| CFinderADM000785 | N6-threonylcarbomyladenosine methylthiotransferase activity hormone-mediated signaling pathway tRNA methylthiolation short-day photoperiodism, flowering negative regulation of photomorphogenesis cotyledon development Ubiquitin_Proteasome_system, E3 adaptor: Cullin 1,3-β-D-glucan biosynthesis sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex endoplasmic reticulum photomorphogenesis flower development ribosome biogenesis protein polyubiquitination ubiquitin protein ligase binding 4 iron, 4 sulfur cluster binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process mRNA splicing, via spliceosome DNA repair GTPase activity ubiquitin protein ligase activity | details |
| CFinderADM000935 | tRNA wobble position uridine thiolation protein urmylation enzyme active site formation via cysteine modification to L-cysteine persulfide mitochondrial translational termination protein adenylylation thiosulfate sulfurtransferase activity protein adenylyltransferase activity URM1 activating enzyme activity GTPase activity extrinsic component of plastid membrane Sulfur relay system molybdenum cofactor biosynthesis Mo-molybdopterin cofactor biosynthetic process chloroplast fission ribosomal large subunit binding protein self-association chloroplast outer membrane Ubiquitin_Proteasome_system, E1: ThiF chaperone binding RNA binding Ubiquitin_Proteasome_system, DUB: OTU ribosome biogenesis RNA secondary structure unwinding Ribosome biogenesis in eukaryotes ATP-dependent RNA helicase activity | details |
| CFinderADM001091 | N6-threonylcarbomyladenosine methylthiotransferase activity hormone-mediated signaling pathway tRNA methylthiolation histone H3 deacetylation cotyledon development short-day photoperiodism, flowering negative regulation of photomorphogenesis NAD-dependent histone deacetylase activity (H3-K14 specific) Notch signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: Cullin sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex photomorphogenesis negative regulation of seed germination flower development ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding 4 iron, 4 sulfur cluster binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis protein binding ubiquitin protein ligase activity nucleus GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding endoplasmic reticulum transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001418 | Hippo signaling pathway -fly cutin biosynthesis long-chain fatty acid activation oleate biosynthesis I (plants) sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing palmitate biosynthesis II (bacteria and plants) suberin monomers biosynthesis transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001522 | Hippo signaling pathway -fly glucose binding glucokinase activity mannokinase activity glucose 6-phosphate metabolic process cellular glucose homeostasis nucleophagy autophagosome assembly fructokinase activity Autophagy - animal carbohydrate phosphorylation endonuclease activity glycolytic process nucleic acid phosphodiester bond hydrolysis transferase activity, transferring acyl groups membrane cytoplasmic part ATP binding Protein processing in endoplasmic reticulum Carbon metabolism protein kinase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001618 | GTPase activity extrinsic component of plastid membrane viral envelope chloroplast outer membrane chloroplast fission protein self-association FK506 binding chaperone-mediated protein folding protein peptidyl-prolyl isomerization ribosome biogenesis Ribosome biogenesis in eukaryotes peptidyl-prolyl cis-trans isomerase activity nucleolus endoplasmic reticulum membrane ligase activity Ubiquitin_Proteasome_system, E3: U-box ubiquitin-protein transferase activity protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding chloroplast stroma | details |
| CFinderADM002281 | protein adenylyltransferase activity thiosulfate sulfurtransferase activity URM1 activating enzyme activity Sulfur relay system protein urmylation enzyme active site formation via cysteine modification to L-cysteine persulfide tRNA wobble position uridine thiolation protein adenylylation peptide metabolic process Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis Ubiquitin_Proteasome_system, E1: ThiF metal ion binding metalloendopeptidase activity ATP binding proteolysis oxidoreductase activity | details |
Expression profiles
 Show details about module gene expression profiling |