CFinderADM000935's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA wobble position uridine thiolation | 0.000117253 | GO:0002143 |
| protein urmylation | 0.000117253 | GO:0032447 |
| enzyme active site formation via cysteine modification to L-cysteine persulfide | 0.000117253 | GO:0018192 |
| mitochondrial translational termination | 0.000117253 | GO:0070126 |
| protein adenylylation | 0.000117253 | GO:0018117 |
| thiosulfate sulfurtransferase activity | 0.000176491 | GO:0004792 |
| protein adenylyltransferase activity | 0.000176491 | GO:0070733 |
| URM1 activating enzyme activity | 0.000176491 | GO:0042292 |
| GTPase activity | 0.000211635 | GO:0003924 |
| extrinsic component of plastid membrane | 0.000220526 | GO:0035452 |
| Sulfur relay system | 0.000237108 | KEGG pathway |
| molybdenum cofactor biosynthesis | 0.000688856 | plantCyc |
| Mo-molybdopterin cofactor biosynthetic process | 0.000729549 | GO:0006777 |
| chloroplast fission | 0.000763718 | GO:0010020 |
| ribosomal large subunit binding | 0.001580123 | GO:0043023 |
| protein self-association | 0.001928375 | GO:0043621 |
| chloroplast outer membrane | 0.003317234 | GO:0009707 |
| Ubiquitin_Proteasome_system, E1: ThiF | 0.003375395 | ubs family |
| chaperone binding | 0.004260143 | GO:0051087 |
| RNA binding | 0.005366139 | GO:0003723 |
| Ubiquitin_Proteasome_system, DUB: OTU | 0.005802629 | ubs family |
| ribosome biogenesis | 0.005932595 | GO:0042254 |
| RNA secondary structure unwinding | 0.007727861 | GO:0010501 |
| Ribosome biogenesis in eukaryotes | 0.012968822 | KEGG pathway |
| ATP-dependent RNA helicase activity | 0.026151104 | GO:0004004 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000462 | AT1G09920 (1.00E-69) | TRAF-type zinc finger-related |
| CRO_T002569 | - | - |
| CRO_T005890 | AT2G02750 (5.00E-171) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T011358 | AT3G07050 (5.00E-177) | NSN1|nucleostemin-like 1 |
| CRO_T013178 | AT1G75010 (9.00E-08) | ARC3|ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 |
| CRO_T015533 | AT3G01800 (4.00E-81) | Ribosome recycling factor |
| CRO_T016511 | AT5G62390 (1.00E-82) | ATBAG7|BCL-2-associated athanogene 7 |
| CRO_T017703 | AT5G17460 (1.00E-91) | unknown protein |
| CRO_T018099 | AT1G53460 (2.00E-56) | |
| CRO_T020080 | - | - |
| CRO_T020566 | AT2G21470 (4.00E-19) | ATSAE2|SUMO-ACTIVATING ENZYME 2; EMB2764|EMBRYO DEFECTIVE 2764 |
| CRO_T023185 | AT4G20020 (6.00E-35) | MORF1|multiple organellar RNA editing factor 1 |
| CRO_T023533 | AT3G25210 (0.000000004) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T024159 | - | - |
| CRO_T025538 | AT5G54910 (0) | DEA(D/H)-box RNA helicase family protein |
| CRO_T027950 | AT3G61300 (0) | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| CRO_T029169 | AT2G39320 (4.00E-13) | Cysteine proteinases superfamily protein |
| CRO_T029186 | AT1G56423 (2.00E-51) | unknown protein |
| CRO_T031296 | AT4G04180 (7.00E-17) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T032608 | AT1G09660 (9.00E-22) | RNA-binding KH domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000462 | negative regulation of photomorphogenesis short-day photoperiodism, flowering hormone-mediated signaling pathway cotyledon development actin filament depolymerization sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex actin cytoskeleton Ubiquitin_Proteasome_system, E3 adaptor: Cullin photomorphogenesis flower development Regulation of actin cytoskeleton ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding actin binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis ubiquitin protein ligase activity GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM000519 | rRNA (pseudouridine) methyltransferase activity rRNA base methylation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) RNA secondary structure unwinding Ribosome biogenesis in eukaryotes Transcription_related, Transcription factor: GRAS ATP-dependent RNA helicase activity rRNA binding small-subunit processome nucleolus Ubiquitin_Proteasome_system, E3 adaptor: F-box transcription, DNA-templated RNA binding regulation of transcription, DNA-templated | details |
| CFinderADM000592 | formation of glycosidic bonds, GlycosylTransferases: GTnc lipid binding transferase activity, transferring glycosyl groups | details |
| CFinderADM000691 | oxidoreductase activity deadenylation-independent decapping of nuclear-transcribed mRNA deadenylation-dependent decapping of nuclear-transcribed mRNA enzyme activator activity transmembrane receptor protein kinase activity positive regulation of catalytic activity Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase cytoplasmic mRNA processing body mRNA binding FMN binding ribosome biogenesis mRNA splicing, via spliceosome signal transduction GTPase activity Ribosome biogenesis in eukaryotes RNA degradation nucleolus | details |
| CFinderADM000785 | N6-threonylcarbomyladenosine methylthiotransferase activity hormone-mediated signaling pathway tRNA methylthiolation short-day photoperiodism, flowering negative regulation of photomorphogenesis cotyledon development Ubiquitin_Proteasome_system, E3 adaptor: Cullin 1,3-β-D-glucan biosynthesis sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex endoplasmic reticulum photomorphogenesis flower development ribosome biogenesis protein polyubiquitination ubiquitin protein ligase binding 4 iron, 4 sulfur cluster binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process mRNA splicing, via spliceosome DNA repair GTPase activity ubiquitin protein ligase activity | details |
| CFinderADM000815 | N6-threonylcarbomyladenosine methylthiotransferase activity tRNA methylthiolation Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family MAPK signaling pathway - yeast Wnt signaling pathway regulation of cell shape Endocytosis ribosome biogenesis SNARE interactions in vesicular transport peptidyl-serine phosphorylation translational initiation Ribosome biogenesis in eukaryotes 4 iron, 4 sulfur cluster binding translation initiation factor activity GTPase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding nucleolus endoplasmic reticulum | details |
| CFinderADM000822 | regulation of translational initiation ribosome biogenesis formation of translation preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex Ribosome biogenesis in eukaryotes GTPase activity translation initiation factor activity nucleolus RNA transport GTP binding | details |
| CFinderADM000843 | Ubiquitin_Proteasome_system, DUB: OTU RNA binding oxidoreductase activity protein serine/threonine kinase activity | details |
| CFinderADM000863 | outer membrane zinc ion binding Prion diseases Ubiquitin_Proteasome_system, E2: UBC ligase activity protein dimerization activity Protein processing in endoplasmic reticulum | details |
| CFinderADM000873 | Ubiquitin_Proteasome_system, E3 adaptor: DWD microtubule cytoskeleton Cul4-RING E3 ubiquitin ligase complex cytoskeletal part triacylglycerol degradation lipid metabolic process kinase activity nucleolus phosphorylation | details |
| CFinderADM000936 | mRNA splicing, via spliceosome Spliceosome Ribosome endoplasmic reticulum | details |
| CFinderADM001049 | phospholipid biosynthetic process vacuolar transport carboxy-lyase activity Glycerophospholipid metabolism N-Glycan biosynthesis proteasome-mediated ubiquitin-dependent protein catabolic process Endocytosis protein ubiquitination ubiquitin protein ligase activity intracellular formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING transferase activity protein kinase activity nucleotide binding | details |
| CFinderADM001091 | N6-threonylcarbomyladenosine methylthiotransferase activity hormone-mediated signaling pathway tRNA methylthiolation histone H3 deacetylation cotyledon development short-day photoperiodism, flowering negative regulation of photomorphogenesis NAD-dependent histone deacetylase activity (H3-K14 specific) Notch signaling pathway Ubiquitin_Proteasome_system, E3 adaptor: Cullin sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex photomorphogenesis negative regulation of seed germination flower development ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding 4 iron, 4 sulfur cluster binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis protein binding ubiquitin protein ligase activity nucleus GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding endoplasmic reticulum transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001333 | extrinsic component of plastid membrane short-day photoperiodism, flowering negative regulation of photomorphogenesis hormone-mediated signaling pathway cotyledon development sugar mediated signaling pathway chloroplast fission Ubiquitin_Proteasome_system, E3 adaptor: Cullin chloroplast outer membrane Cul4-RING E3 ubiquitin ligase complex photomorphogenesis protein self-association flower development protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis ubiquitin protein ligase binding DNA repair ubiquitin protein ligase activity GTPase activity transporter activity Ubiquitin_Proteasome_system, E3 adaptor: DWD transport intracellular chloroplast stroma | details |
| CFinderADM001369 | soluble NSF attachment protein activity syntaxin binding membrane fusion ribosome biogenesis Ubiquitin_Proteasome_system, DUB: OTU zinc ion binding Ribosome biogenesis in eukaryotes SNARE complex GTPase activity intracellular protein transport nucleolus vacuolar membrane GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001506 | Ubiquitin_Proteasome_system, E3: RING exocyst localization exocyst assembly copper ion export copper-exporting ATPase activity protein polyubiquitination zinc ion binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process exocyst MAPK signaling pathway - plant copper ion binding ubiquitin protein ligase activity intracellular membrane-bounded organelle integral component of plasma membrane RNA binding nucleotide binding | details |
| CFinderADM001618 | GTPase activity extrinsic component of plastid membrane viral envelope chloroplast outer membrane chloroplast fission protein self-association FK506 binding chaperone-mediated protein folding protein peptidyl-prolyl isomerization ribosome biogenesis Ribosome biogenesis in eukaryotes peptidyl-prolyl cis-trans isomerase activity nucleolus endoplasmic reticulum membrane ligase activity Ubiquitin_Proteasome_system, E3: U-box ubiquitin-protein transferase activity protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding chloroplast stroma | details |
| CFinderADM001721 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING zinc ion binding | details |
| CFinderADM001754 | mitochondrial translational termination tRNA wobble uridine modification ribosomal large subunit binding Rho guanyl-nucleotide exchange factor activity positive regulation of GTPase activity transport transporter activity mitochondrion oxidoreductase activity nucleic acid binding nucleotide binding | details |
| CFinderADM001755 | mitochondrial translational termination outer membrane ribosomal large subunit binding Circadian rhythm - plant Ubiquitin_Proteasome_system, E3 adaptor: F-box mitochondrion zinc ion binding | details |
| CFinderADM001966 | Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase mevalonate pathway I receptor-mediated endocytosis coenzyme A metabolic process scavenger receptor activity pyridoxamine-phosphate oxidase activity hydroxymethylglutaryl-CoA reductase (NADPH) activity pyridoxal phosphate biosynthetic process tRNA wobble uridine modification transmembrane transport protein tyrosine kinase activity oxidation-reduction process isoprenoid biosynthetic process Rho guanyl-nucleotide exchange factor activity Terpenoid backbone biosynthesis peptidyl-tyrosine phosphorylation positive regulation of GTPase activity transmembrane transporter activity FMN binding NADP binding S-adenosylmethionine-dependent methyltransferase activity endosome vacuolar membrane endoplasmic reticulum membrane integral component of membrane trans-Golgi network transporter activity methylation | details |
| CFinderADM001992 | indole-3-glycerol-phosphate lyase activity nuclear part tryptophan synthase activity auxin biosynthetic process L-tryptophan biosynthesis membrane coat tryptophan biosynthetic process structural molecule activity MAPK signaling pathway ribosome biogenesis cellular amino acid biosynthetic process Proteasome vesicle-mediated transport Biosynthesis of amino acids Ribosome biogenesis in eukaryotes endomembrane system intracellular protein transport GTPase activity pyridoxal phosphate binding Ubiquitin_Proteasome_system, E3 adaptor: DWD nucleolus GTP binding hydrolase activity | details |
| CFinderADM002031 | serine-type endopeptidase activity transporter activity transport proteolysis protein kinase activity mitochondrion nucleotide binding | details |
| CFinderADM002083 | Protein_kinases_phosphatases, PPC:1.12.1: Leucine Rich Repeat Kinase X Ribosome translation protein kinase activity structural constituent of ribosome protein phosphorylation | details |
| CFinderADM002281 | protein adenylyltransferase activity thiosulfate sulfurtransferase activity URM1 activating enzyme activity Sulfur relay system protein urmylation enzyme active site formation via cysteine modification to L-cysteine persulfide tRNA wobble position uridine thiolation protein adenylylation peptide metabolic process Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis Ubiquitin_Proteasome_system, E1: ThiF metal ion binding metalloendopeptidase activity ATP binding proteolysis oxidoreductase activity | details |
| CFinderADM002306 | response to stress | details |
Expression profiles
 Show details about module gene expression profiling |