CFinderADM001399's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ATP-dependent chromatin remodeling | 2.47E-05 | GO:0043044 |
| glycine decarboxylation via glycine cleavage system | 2.47E-05 | GO:0019464 |
| organ boundary specification between lateral organs and the meristem | 2.47E-05 | GO:0010199 |
| regulation of gene expression, epigenetic | 2.59E-05 | GO:0040029 |
| RNA biosynthetic process | 2.77E-05 | GO:0032774 |
| glycine cleavage complex | 3.58E-05 | GO:0005960 |
| positive regulation of proteasomal protein catabolic process | 3.70E-05 | GO:1901800 |
| positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.88E-05 | GO:0045899 |
| cytosolic proteasome complex | 6.55E-05 | GO:0031597 |
| nuclear proteasome complex | 6.55E-05 | GO:0031595 |
| proteasome regulatory particle, base subcomplex | 0.000107103 | GO:0008540 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.000117108 | GO:0030433 |
| DNA-directed RNA polymerase III complex | 0.00012204 | GO:0005666 |
| folate transformations II | 0.000124697 | plantCyc |
| glycine cleavage | 0.000124697 | plantCyc |
| photorespiration | 0.000124697 | plantCyc |
| TBP-class protein binding | 0.000172716 | GO:0017025 |
| DNA-dependent ATPase activity | 0.000172716 | GO:0008094 |
| proteasome-activating ATPase activity | 0.000172716 | GO:0036402 |
| RNA polymerase III activity | 0.000210827 | GO:0001056 |
| Transcription_related, Transcription regulator: SNF2 | 0.000253097 | TF family |
| chromatin binding | 0.000805986 | GO:0003682 |
| helicase activity | 0.00116972 | GO:0004386 |
| Proteasome | 0.001240174 | KEGG pathway |
| peptidase activity | 0.001454807 | GO:0008233 |
| ATP binding | 0.004516147 | GO:0005524 |
| Purine metabolism | 0.006559544 | KEGG pathway |
| transferase activity | 0.012860045 | GO:0016740 |
| Carbon metabolism | 0.013603014 | KEGG pathway |
| regulation of transcription, DNA-templated | 0.034715914 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005247 | AT5G23710 (1.00E-32) | DNA binding; DNA-directed RNA polymerases |
| CRO_T007416 | AT5G39600 (8.00E-53) | |
| CRO_T015974 | AT2G35120 (2.00E-58) | Single hybrid motif superfamily protein |
| CRO_T018756 | AT5G19990 (0) | RPT6A|regulatory particle triple-A ATPase 6A |
| CRO_T024665 | AT2G46020 (0) | ATBRM|BRAHMA; CHR2|CHROMATIN REMODELING 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000794 | Measles Herpes simplex infection positive regulation of translational fidelity ATP-dependent chromatin remodeling organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic DNA-dependent ATPase activity Transcription_related, Transcription regulator: SNF2 mitochondrial matrix cytosolic small ribosomal subunit chromatin binding helicase activity rRNA binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Ribosome translation transferase activity structural constituent of ribosome regulation of transcription, DNA-templated | details |
| CFinderADM001133 | single fertilization regulation of gene expression, epigenetic ATP-dependent chromatin remodeling organ boundary specification between lateral organs and the meristem double fertilization forming a zygote and endosperm polar nucleus fusion Transcription_related, Transcription regulator: SNF2 mitochondrial large ribosomal subunit DNA-dependent ATPase activity microtubule-severing ATPase activity pollen development chromatin binding helicase activity rRNA binding cytoplasmic part ATP binding Ribosome translation transferase activity structural constituent of ribosome regulation of transcription, DNA-templated | details |
| CFinderADM001739 | glycine decarboxylation via glycine cleavage system respiratory chain complex II asparaginase activity glycine cleavage complex cation transmembrane transporter activity cation transmembrane transport L-asparagine degradation I glycine cleavage superpathway of aspartate and asparagine biosynthesis photorespiration folate transformations II aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) hydrolase activity, acting on ester bonds Carbon metabolism | details |
| CFinderADM002062 | organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic ATP-dependent chromatin remodeling transferase activity DNA-dependent ATPase activity Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 chromatin binding helicase activity cytosolic large ribosomal subunit Ribosome translation Ubiquitin_Proteasome_system, E3: RING structural constituent of ribosome regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |