CFinderADM000794's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
Measles | 3.47E-06 | KEGG pathway |
Herpes simplex infection | 1.21E-05 | KEGG pathway |
positive regulation of translational fidelity | 1.46E-05 | GO:0045903 |
ATP-dependent chromatin remodeling | 1.46E-05 | GO:0043044 |
organ boundary specification between lateral organs and the meristem | 1.46E-05 | GO:0010199 |
regulation of gene expression, epigenetic | 1.54E-05 | GO:0040029 |
DNA-dependent ATPase activity | 0.000445502 | GO:0008094 |
Transcription_related, Transcription regulator: SNF2 | 0.000703046 | TF family |
mitochondrial matrix | 0.000997462 | GO:0005759 |
cytosolic small ribosomal subunit | 0.000997462 | GO:0022627 |
chromatin binding | 0.001732465 | GO:0003682 |
helicase activity | 0.002011449 | GO:0004386 |
rRNA binding | 0.003317703 | GO:0019843 |
Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.006505237 | ubs family |
Ribosome | 0.009191238 | KEGG pathway |
translation | 0.014931429 | GO:0006412 |
transferase activity | 0.023779857 | GO:0016740 |
structural constituent of ribosome | 0.032806395 | GO:0003735 |
regulation of transcription, DNA-templated | 0.034933084 | GO:0006355 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T011390 | AT3G49660 (9.00E-25) | WDR5a|human WDR5 (WD40 repeat) homolog a |
CRO_T019187 | AT5G39850 (4.00E-95) | Ribosomal protein S4 |
CRO_T021035 | AT2G39790 (8.00E-30) | Mitochondrial glycoprotein family protein |
CRO_T024665 | AT2G46020 (0) | ATBRM|BRAHMA; CHR2|CHROMATIN REMODELING 2 |
CRO_T026630 | AT3G14580 (7.00E-21) | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
CFinderADM001133 | single fertilization regulation of gene expression, epigenetic ATP-dependent chromatin remodeling organ boundary specification between lateral organs and the meristem double fertilization forming a zygote and endosperm polar nucleus fusion Transcription_related, Transcription regulator: SNF2 mitochondrial large ribosomal subunit DNA-dependent ATPase activity microtubule-severing ATPase activity pollen development chromatin binding helicase activity rRNA binding cytoplasmic part ATP binding Ribosome translation transferase activity structural constituent of ribosome regulation of transcription, DNA-templated | details |
CFinderADM001399 | ATP-dependent chromatin remodeling glycine decarboxylation via glycine cleavage system organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic RNA biosynthetic process glycine cleavage complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process DNA-directed RNA polymerase III complex folate transformations II glycine cleavage photorespiration TBP-class protein binding DNA-dependent ATPase activity proteasome-activating ATPase activity RNA polymerase III activity Transcription_related, Transcription regulator: SNF2 chromatin binding helicase activity Proteasome peptidase activity ATP binding Purine metabolism transferase activity Carbon metabolism regulation of transcription, DNA-templated | details |
CFinderADM001423 | structural constituent of ribosome cytosolic small ribosomal subunit nuclear-transcribed mRNA catabolic process positive regulation of translational fidelity translation large ribosomal subunit rRNA binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase ribosomal large subunit assembly cytoplasmic translation preribosome, large subunit precursor rRNA processing rRNA binding intracellular signal transduction cytosolic large ribosomal subunit nucleolus Ribosome protein serine/threonine kinase activity | details |
CFinderADM002062 | organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic ATP-dependent chromatin remodeling transferase activity DNA-dependent ATPase activity Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 chromatin binding helicase activity cytosolic large ribosomal subunit Ribosome translation Ubiquitin_Proteasome_system, E3: RING structural constituent of ribosome regulation of transcription, DNA-templated | details |
Expression profiles
Show details about module gene expression profiling |