CFinderADM000794's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Measles 3.47E-06KEGG pathway
Herpes simplex infection 1.21E-05KEGG pathway
positive regulation of translational fidelity1.46E-05GO:0045903
ATP-dependent chromatin remodeling1.46E-05GO:0043044
organ boundary specification between lateral organs and the meristem1.46E-05GO:0010199
regulation of gene expression, epigenetic1.54E-05GO:0040029
DNA-dependent ATPase activity0.000445502GO:0008094
Transcription_related, Transcription regulator: SNF20.000703046TF family
mitochondrial matrix0.000997462GO:0005759
cytosolic small ribosomal subunit0.000997462GO:0022627
chromatin binding0.001732465GO:0003682
helicase activity0.002011449GO:0004386
rRNA binding0.003317703GO:0019843
Ubiquitin_Proteasome_system, E3 adaptor: DWD0.006505237ubs family
Ribosome 0.009191238KEGG pathway
translation0.014931429GO:0006412
transferase activity0.023779857GO:0016740
structural constituent of ribosome0.032806395GO:0003735
regulation of transcription, DNA-templated0.034933084GO:0006355

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T011390AT3G49660 (9.00E-25)WDR5a|human WDR5 (WD40 repeat) homolog a
CRO_T019187AT5G39850 (4.00E-95)Ribosomal protein S4
CRO_T021035AT2G39790 (8.00E-30)Mitochondrial glycoprotein family protein
CRO_T024665AT2G46020 (0)ATBRM|BRAHMA; CHR2|CHROMATIN REMODELING 2
CRO_T026630AT3G14580 (7.00E-21)Pentatricopeptide repeat (PPR) superfamily protein

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderADM000002Transcription_related, Transcription factor: M-type
phosphatidylethanolamine binding
L-alanine biosynthesis III
nickel cation binding
photoperiodism, flowering
molybdenum cofactor biosynthesis
transferase activity, transferring alkyl or aryl (other than methyl) groups
regulation of flower development
nitrogen compound metabolic process
Circadian rhythm - plant
Transcription_related, Transcription factor: G2-like
transferase activity, transferring hexosyl groups
Transcription_related, Transcription factor: MYB-related
DNA-directed RNA polymerase activity
Terpenoid backbone biosynthesis
Transcription_related, Transcription factor: B3
multicellular organism development
Transcription_related, Transcription factor: NAC
binding
Transcription_related, Transcription factor: FAR1
transcription, DNA-templated
GTPase activity
Purine metabolism
details
CFinderADM001133single fertilization
regulation of gene expression, epigenetic
ATP-dependent chromatin remodeling
organ boundary specification between lateral organs and the meristem
double fertilization forming a zygote and endosperm
polar nucleus fusion
Transcription_related, Transcription regulator: SNF2
mitochondrial large ribosomal subunit
DNA-dependent ATPase activity
microtubule-severing ATPase activity
pollen development
chromatin binding
helicase activity
rRNA binding
cytoplasmic part
ATP binding
Ribosome
translation
transferase activity
structural constituent of ribosome
regulation of transcription, DNA-templated
details
CFinderADM001399ATP-dependent chromatin remodeling
glycine decarboxylation via glycine cleavage system
organ boundary specification between lateral organs and the meristem
regulation of gene expression, epigenetic
RNA biosynthetic process
glycine cleavage complex
positive regulation of proteasomal protein catabolic process
positive regulation of RNA polymerase II transcriptional preinitiation complex assembly
cytosolic proteasome complex
nuclear proteasome complex
proteasome regulatory particle, base subcomplex
ER-associated ubiquitin-dependent protein catabolic process
DNA-directed RNA polymerase III complex
folate transformations II
glycine cleavage
photorespiration
TBP-class protein binding
DNA-dependent ATPase activity
proteasome-activating ATPase activity
RNA polymerase III activity
Transcription_related, Transcription regulator: SNF2
chromatin binding
helicase activity
Proteasome
peptidase activity
ATP binding
Purine metabolism
transferase activity
Carbon metabolism
regulation of transcription, DNA-templated
details
CFinderADM001423structural constituent of ribosome
cytosolic small ribosomal subunit
nuclear-transcribed mRNA catabolic process
positive regulation of translational fidelity
translation
large ribosomal subunit rRNA binding
Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase
ribosomal large subunit assembly
cytoplasmic translation
preribosome, large subunit precursor
rRNA processing
rRNA binding
intracellular signal transduction
cytosolic large ribosomal subunit
nucleolus
Ribosome
protein serine/threonine kinase activity
details
CFinderADM002062organ boundary specification between lateral organs and the meristem
regulation of gene expression, epigenetic
ATP-dependent chromatin remodeling
transferase activity
DNA-dependent ATPase activity
Transcription_related, Transcription regulator: PHD
Transcription_related, Transcription regulator: SNF2
chromatin binding
helicase activity
cytosolic large ribosomal subunit
Ribosome
translation
Ubiquitin_Proteasome_system, E3: RING
structural constituent of ribosome
regulation of transcription, DNA-templated
details

Expression profiles


Show details about module gene expression profiling
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