CFinderADM001408's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphatidylinositol-4,5-bisphosphate binding | 5.13E-06 | GO:0005546 |
| GTP-Rho binding | 5.13E-06 | GO:0017049 |
| exocyst localization | 1.73E-05 | GO:0051601 |
| Golgi to plasma membrane transport | 1.73E-05 | GO:0006893 |
| Peroxisome | 0.000139572 | KEGG pathway |
| vindoline and vinblastine biosynthesis | 0.000286676 | plantCyc |
| exocytosis | 0.000594986 | GO:0006887 |
| exocyst | 0.001058932 | GO:0000145 |
| membrane part | 0.001058932 | GO:0044425 |
| vesicle-mediated transport | 0.001495682 | GO:0016192 |
| dioxygenase activity | 0.001879884 | GO:0051213 |
| vacuolar membrane | 0.005562206 | GO:0005774 |
| endoplasmic reticulum | 0.010964342 | GO:0005783 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005091 | AT4G27540 (4.00E-64) | PRA1.H|prenylated RAB acceptor 1.H |
| CRO_T011576 | AT4G05530 (3.00E-25) | IBR1|indole-3-butyric acid response 1; SDRA|SHORT-CHAIN DEHYDROGENASE/REDUCTASE A |
| CRO_T020712 | - | - |
| CRO_T027983 | AT1G47550 (0) | SEC3A|exocyst complex component sec3A |
| CRO_T029401 | AT4G10500 (5.00E-53) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001021 | regulation of lipid metabolic process vindoline and vinblastine biosynthesis maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) vesicle-mediated transport small-subunit processome dioxygenase activity nucleolus endoplasmic reticulum | details |
| CFinderADM001144 | pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process vesicle docking involved in exocytosis pyrimidine ribonucleosides salvage I uridine kinase activity xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc exocyst membrane part phosphorylation RNA binding | details |
| CFinderADM001217 | pyridoxal 4-dehydrogenase activity L-galactose dehydrogenase activity protein K63-linked deubiquitination positive regulation of vacuole organization positive regulation of intracellular protein transport protein K48-linked deubiquitination L-ascorbic acid biosynthetic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM primary root development Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family L-ascorbate biosynthesis I (L-galactose pathway) Endocytosis Ascorbate and aldarate metabolism unidimensional cell growth vindoline and vinblastine biosynthesis plant-type cell wall organization cell redox homeostasis cell dioxygenase activity oxidation-reduction process | details |
| CFinderADM001442 | nucleosome assembly nucleosome membrane part GTPase activity GTP binding | details |
| CFinderADM001557 | ceramide degradation D-erythro-sphingosine kinase activity sphingolipid biosynthetic process sphingolipid biosynthesis (plants) ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex protein polyubiquitination RNA degradation protein ubiquitination involved in ubiquitin-dependent protein catabolic process vesicle-mediated transport ligase activity ubiquitin protein ligase activity phosphorylation Ubiquitin_Proteasome_system, E3 adaptor: F-box Ubiquitin_Proteasome_system, E3: RING endoplasmic reticulum zinc ion binding | details |
| CFinderADM001773 | regulation of lipid metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc histone lysine methylation (1->3)-beta-D-glucan biosynthetic process 1,3-β-D-glucan biosynthesis histone-lysine N-methyltransferase activity Lysine degradation 1,3-beta-D-glucan synthase complex Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription regulator: SET 1,3-beta-D-glucan synthase activity histone binding vindoline and vinblastine biosynthesis chromosome Plant-pathogen interaction dioxygenase activity calcium ion binding protein phosphorylation protein serine/threonine kinase activity | details |
| CFinderADM002013 | leaf pavement cell development heterochromatin maintenance regulation of mRNA polyadenylation positive regulation of chromatin silencing positive regulation of histone H3-K27 methylation regulation of lipid metabolic process positive regulation of histone H3-K9 dimethylation regulation of DNA methylation regulation of leaf development positive regulation of flower development phospholipid translocation Arginine and proline metabolism vegetative to reproductive phase transition of meristem defense response to fungus vindoline and vinblastine biosynthesis phospholipid-translocating ATPase activity L-ascorbic acid binding signal transduction oxidation-reduction process magnesium ion binding dioxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen trans-Golgi network endosome sequence-specific DNA binding iron ion binding | details |
| CFinderADM002167 | histone lysine methylation Lysine degradation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET histone binding vindoline and vinblastine biosynthesis chromosome cell cell redox homeostasis dioxygenase activity | details |
| CFinderADM002185 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Peroxisome vindoline and vinblastine biosynthesis cell vacuolar membrane cell redox homeostasis dioxygenase activity | details |
Expression profiles
 Show details about module gene expression profiling |