CFinderADM001413's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cullin deneddylation | 2.36E-05 | GO:0010388 |
| COP9 signalosome | 2.36E-05 | GO:0008180 |
| Ubiquitin_Proteasome_system, DUB: JAMM | 2.47E-05 | ubs family |
| spliceosomal complex | 7.54E-05 | GO:0005681 |
| mRNA splicing, via spliceosome | 0.000398161 | GO:0000398 |
| Spliceosome | 0.003260414 | KEGG pathway |
| RNA binding | 0.024145332 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012733 | AT4G26430 (7.00E-134) | CSN6B|COP9 signalosome subunit 6B |
| CRO_T012756 | - | - |
| CRO_T017811 | AT5G06160 (8.00E-53) | ATO|ATROPOS |
| CRO_T020214 | AT2G47960 (2.00E-144) | unknown protein |
| CRO_T025204 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000139 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
| CFinderADM000353 | COP9 signalosome cullin deneddylation brassinosteroid mediated signaling pathway Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription regulator: SET protein dephosphorylation phosphoprotein phosphatase activity methylation methyltransferase activity transferase activity | details |
| CFinderADM000468 | thiosulfate disproportionation IV (rhodanese) resolution of recombination intermediates Golgi vesicle budding sister chromatid cohesion Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation phospholipid translocation double-strand break repair via homologous recombination COP9 signalosome Smc5-Smc6 complex Sulfur metabolism phospholipid-translocating ATPase activity Phenylpropanoid biosynthesis RNA processing coenzyme binding Golgi membrane Spliceosome trans-Golgi network magnesium ion binding plasmodesma | details |
| CFinderADM000491 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM mRNA processing ATP-dependent helicase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box binding nucleic acid binding | details |
| CFinderADM000567 | structural molecule activity membrane coat vesicle-mediated transport intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: DWD mitochondrion | details |
| CFinderADM000651 | Spliceosome peptidyl-lysine methylation Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome protein-lysine N-methyltransferase activity RNA processing nucleus transcription, DNA-templated RNA binding nucleotide binding | details |
| CFinderADM000779 | IMP dehydrogenase activity peptide metabolic process GMP biosynthetic process Ubiquitin_Proteasome_system, DUB: JAMM guanosine ribonucleotides de novo biosynthesis cullin deneddylation adenosine nucleotides degradation I COP9 signalosome protein disulfide isomerase activity formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex cell metalloendopeptidase activity metal ion binding translation initiation factor activity cell redox homeostasis Purine metabolism RNA transport Protein processing in endoplasmic reticulum proteolysis | details |
| CFinderADM000785 | N6-threonylcarbomyladenosine methylthiotransferase activity hormone-mediated signaling pathway tRNA methylthiolation short-day photoperiodism, flowering negative regulation of photomorphogenesis cotyledon development Ubiquitin_Proteasome_system, E3 adaptor: Cullin 1,3-β-D-glucan biosynthesis sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex endoplasmic reticulum photomorphogenesis flower development ribosome biogenesis protein polyubiquitination ubiquitin protein ligase binding 4 iron, 4 sulfur cluster binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process mRNA splicing, via spliceosome DNA repair GTPase activity ubiquitin protein ligase activity | details |
| CFinderADM000983 | membrane coat structural molecule activity methyltransferase activity vesicle-mediated transport intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: DWD metabolic process cytoplasm | details |
| CFinderADM001303 | Non-homologous end-joining cellular response to X-ray cellular response to gamma radiation Ku70:Ku80 complex oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex telomeric DNA binding 2-oxoglutarate decarboxylation to succinyl-CoA double-strand break repair via nonhomologous end joining telomere maintenance cullin deneddylation 1,3-β-D-glucan biosynthesis nuclear chromosome, telomeric region COP9 signalosome ATP-dependent DNA helicase activity (1->3)-beta-D-glucan biosynthetic process thiamine pyrophosphate binding Ubiquitin_Proteasome_system, DUB: JAMM 1,3-beta-D-glucan synthase complex 1,3-beta-D-glucan synthase activity DNA recombination DNA duplex unwinding tricarboxylic acid cycle damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) double-stranded DNA binding response to stimulus coenzyme binding Phenylpropanoid biosynthesis small-subunit processome cytosol nucleolus | details |
Expression profiles
 Show details about module gene expression profiling |