CFinderADM001424's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Herpes simplex infection | 3.66E-05 | KEGG pathway |
| proteolysis | 0.000131036 | GO:0006508 |
| clathrin adaptor complex | 0.000707671 | GO:0030131 |
| protein catabolic process | 0.001585497 | GO:0030163 |
| protein transporter activity | 0.002014088 | GO:0008565 |
| aspartic-type endopeptidase activity | 0.002014088 | GO:0004190 |
| vesicle-mediated transport | 0.003913403 | GO:0016192 |
| Endocytosis | 0.003938422 | KEGG pathway |
| serine-type endopeptidase activity | 0.004656621 | GO:0004252 |
| intracellular protein transport | 0.006999009 | GO:0006886 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.013268518 | ubs family |
| plant-type cell wall | 0.014256359 | GO:0009505 |
| membrane | 0.016157512 | GO:0016020 |
| cell wall | 0.019052136 | GO:0005618 |
| extracellular region | 0.019052136 | GO:0005576 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001707 | AT2G19170 (0) | SLP3|subtilisin-like serine protease 3 |
| CRO_T007034 | AT2G41600 (2.00E-36) | Mitochondrial glycoprotein family protein |
| CRO_T010690 | AT1G04520 (4.00E-90) | PDLP2|plasmodesmata-located protein 2 |
| CRO_T020608 | - | - |
| CRO_T021588 | AT4G16563 (6.00E-37) | Eukaryotic aspartyl protease family protein |
| CRO_T022058 | - | - |
| CRO_T032704 | AT1G23900 (5.00E-31) | GAMMA-ADAPTIN 1|gamma-adaptin 1; Gamma-ADR|Gamma-adaptin |
| CRO_T033382 | AT3G56590 (4.00E-73) | hydroxyproline-rich glycoprotein family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000434 | Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E2: UBC Ubiquitin mediated proteolysis transferase activity, transferring hexosyl groups peptidyl-prolyl cis-trans isomerase activity protein peptidyl-prolyl isomerization Ubiquitin_Proteasome_system, E3: U-box serine-type endopeptidase activity ubiquitin-protein transferase activity lipid metabolic process protein folding protein ubiquitination formation of glycosidic bonds, GlycosylTransferases: GTnc extracellular region cell wall ATP binding transport protein kinase activity | details |
| CFinderADM000709 | Transcription_related, Transcription factor: HB Ubiquitin_Proteasome_system, E3 adaptor: BTB aspartic-type endopeptidase activity apoplast sequence-specific DNA binding proteolysis transport | details |
| CFinderADM000710 | aspartic-type endopeptidase activity apoplast proteolysis integral component of membrane | details |
| CFinderADM000731 | Herpes simplex infection detection of brassinosteroid stimulus positive regulation of protein export from nucleus root hair cell differentiation brassinosteroid mediated signaling pathway Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ubiquitin_Proteasome_system, E3: RING leaf morphogenesis multidimensional cell growth Phenylpropanoid biosynthesis protein autophosphorylation response to auxin cytosol Transcription_related, Transcription factor: C2H2 coenzyme binding Ubiquitin_Proteasome_system, E3: U-box | details |
| CFinderADM001217 | pyridoxal 4-dehydrogenase activity L-galactose dehydrogenase activity protein K63-linked deubiquitination positive regulation of vacuole organization positive regulation of intracellular protein transport protein K48-linked deubiquitination L-ascorbic acid biosynthetic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM primary root development Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family L-ascorbate biosynthesis I (L-galactose pathway) Endocytosis Ascorbate and aldarate metabolism unidimensional cell growth vindoline and vinblastine biosynthesis plant-type cell wall organization cell redox homeostasis cell dioxygenase activity oxidation-reduction process | details |
| CFinderADM001243 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII Transcription_related, Transcription regulator: DDT clathrin adaptor complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Endocytosis protein transporter activity vesicle-mediated transport intracellular protein transport Ubiquitin_Proteasome_system, E3: RING integral component of membrane protein phosphorylation | details |
| CFinderADM001425 | FK506 binding chaperone-mediated protein folding protein peptidyl-prolyl isomerization DNA replication peptidyl-prolyl cis-trans isomerase activity endoplasmic reticulum membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM002099 | Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Adherens junction glycyl-tRNA aminoacylation glycine-tRNA ligase activity Herpes simplex infection plant sterol biosynthesis Steroid biosynthesis NF-kappa B signaling pathway Aminoacyl-tRNA biosynthesis ATP binding protein kinase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |