CFinderADM000731's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Herpes simplex infection | 2.54E-05 | KEGG pathway |
| detection of brassinosteroid stimulus | 6.54E-05 | GO:0009729 |
| positive regulation of protein export from nucleus | 6.54E-05 | GO:0046827 |
| root hair cell differentiation | 0.000108875 | GO:0048765 |
| brassinosteroid mediated signaling pathway | 0.000493822 | GO:0009742 |
| Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family | 0.000585557 | kinase family |
| Ubiquitin_Proteasome_system, E3: RING | 0.000585557 | ubs family |
| leaf morphogenesis | 0.000740901 | GO:0009965 |
| multidimensional cell growth | 0.000757635 | GO:0009825 |
| Phenylpropanoid biosynthesis | 0.002763805 | KEGG pathway |
| protein autophosphorylation | 0.003409445 | GO:0046777 |
| response to auxin | 0.003409445 | GO:0009733 |
| cytosol | 0.0077505 | GO:0005829 |
| Transcription_related, Transcription factor: C2H2 | 0.008734488 | TF family |
| coenzyme binding | 0.011537194 | GO:0050662 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.012368215 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004411 | AT1G06390 (0) | ATSK2-3|A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3; ATSK22|SHAGGY-LIKE PROTEIN KINASE 22; BIL2|BIN2-LIKE 2; GSK1|GSK3/SHAGGY-like protein kinase 1 |
| CRO_T007034 | AT2G41600 (2.00E-36) | Mitochondrial glycoprotein family protein |
| CRO_T007440 | AT1G02860 (7.00E-04) | BAH1|BENZOIC ACID HYPERSENSITIVE 1; NLA|nitrogen limitation adaptation |
| CRO_T009694 | AT5G10650 (3.00E-20) | RING/U-box superfamily protein |
| CRO_T010972 | - | - |
| CRO_T018218 | - | - |
| CRO_T018601 | AT2G33590 (8.00E-114) | CRL1|CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 |
| CRO_T022153 | AT1G44790 (6.00E-66) | ChaC-like family protein |
| CRO_T024852 | AT5G20120 (5.00E-40) | unknown protein |
| CRO_T028735 | - | - |
| CRO_T033245 | AT1G43690 (0) | ubiquitin interaction motif-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000468 | thiosulfate disproportionation IV (rhodanese) resolution of recombination intermediates Golgi vesicle budding sister chromatid cohesion Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation phospholipid translocation double-strand break repair via homologous recombination COP9 signalosome Smc5-Smc6 complex Sulfur metabolism phospholipid-translocating ATPase activity Phenylpropanoid biosynthesis RNA processing coenzyme binding Golgi membrane Spliceosome trans-Golgi network magnesium ion binding plasmodesma | details |
| CFinderADM001303 | Non-homologous end-joining cellular response to X-ray cellular response to gamma radiation Ku70:Ku80 complex oxoglutarate dehydrogenase (succinyl-transferring) activity oxoglutarate dehydrogenase complex telomeric DNA binding 2-oxoglutarate decarboxylation to succinyl-CoA double-strand break repair via nonhomologous end joining telomere maintenance cullin deneddylation 1,3-β-D-glucan biosynthesis nuclear chromosome, telomeric region COP9 signalosome ATP-dependent DNA helicase activity (1->3)-beta-D-glucan biosynthetic process thiamine pyrophosphate binding Ubiquitin_Proteasome_system, DUB: JAMM 1,3-beta-D-glucan synthase complex 1,3-beta-D-glucan synthase activity DNA recombination DNA duplex unwinding tricarboxylic acid cycle damaged DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) double-stranded DNA binding response to stimulus coenzyme binding Phenylpropanoid biosynthesis small-subunit processome cytosol nucleolus | details |
| CFinderADM001424 | Herpes simplex infection proteolysis clathrin adaptor complex protein catabolic process protein transporter activity aspartic-type endopeptidase activity vesicle-mediated transport Endocytosis serine-type endopeptidase activity intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: F-box plant-type cell wall membrane cell wall extracellular region | details |
| CFinderADM001575 | Protein_kinases_phosphatases, PPC:1.15.2: Leucine Rich Repeat Kinase VI positive regulation of protein export from nucleus galactose catabolic process detection of gravity detection of brassinosteroid stimulus phosphoglucomutase activity Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family root hair cell differentiation GDP-glucose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis glycogen biosynthetic process starch biosynthesis sucrose biosynthesis II brassinosteroid mediated signaling pathway glucose metabolic process leaf morphogenesis starch biosynthetic process multidimensional cell growth Glycolysis / Gluconeogenesis stromule protein autophosphorylation hydrogen peroxide catabolic process response to auxin cellular oxidant detoxification response to oxidative stress Phenylpropanoid biosynthesis peroxidase activity magnesium ion binding ATP binding protein kinase activity extracellular region | details |
| CFinderADM001760 | phosphoglycerate kinase activity phosphate-containing compound metabolic process reductive pentose-phosphate cycle inorganic diphosphatase activity glycolytic process Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Phenylpropanoid biosynthesis coenzyme binding heterocyclic compound binding organic cyclic compound binding helicase activity magnesium ion binding catalytic activity Carbon metabolism Oxidative phosphorylation | details |
| CFinderADM001839 | regulation of G2/M transition of mitotic cell cycle histone monoubiquitination histone H2B ubiquitination seed dormancy process Ubiquitin_Proteasome_system, E3: RING defense response to fungus, incompatible interaction cytokinesis by cell plate formation cell plate cell growth leaf morphogenesis vegetative to reproductive phase transition of meristem protein peptidyl-prolyl isomerization cell division Endocytosis small GTPase mediated signal transduction protein folding peptidyl-prolyl cis-trans isomerase activity protein homodimerization activity ligase activity ubiquitin-protein transferase activity endosome GTP binding plasmodesma hydrolase activity | details |
| CFinderADM002003 | positive regulation of protein export from nucleus negative regulation of cellular macromolecule biosynthetic process negative regulation of nitrogen compound metabolic process detection of brassinosteroid stimulus production of small RNA involved in gene silencing by RNA regulation of primary metabolic process root hair cell differentiation Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family regulation of gene expression, epigenetic brassinosteroid mediated signaling pathway leaf morphogenesis multidimensional cell growth protein autophosphorylation response to auxin hydrogen peroxide catabolic process Phenylpropanoid biosynthesis response to oxidative stress cellular oxidant detoxification peroxidase activity endoplasmic reticulum membrane extracellular region heme binding | details |
| CFinderADM002099 | Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Adherens junction glycyl-tRNA aminoacylation glycine-tRNA ligase activity Herpes simplex infection plant sterol biosynthesis Steroid biosynthesis NF-kappa B signaling pathway Aminoacyl-tRNA biosynthesis ATP binding protein kinase activity protein phosphorylation | details |
| CFinderADM002179 | coenzyme binding Transcription_related, Transcription factor: bZIP Phenylpropanoid biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity plasmodesma | details |
Expression profiles
 Show details about module gene expression profiling |