CFinderADM001447's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| molybdenum ion binding | 3.67E-11 | GO:0030151 |
| pyridoxal phosphate binding | 5.95E-07 | GO:0030170 |
| catalytic activity | 4.45E-06 | GO:0003824 |
| dolichyl-phosphate beta-D-mannosyltransferase activity | 4.45E-06 | GO:0004582 |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 5.96E-06 | GO:0004169 |
| dolichol metabolic process | 1.46E-05 | GO:0019348 |
| protein O-linked mannosylation | 1.46E-05 | GO:0035269 |
| anaphase-promoting complex | 3.23E-05 | GO:0005680 |
| spindle | 3.81E-05 | GO:0005819 |
| megagametogenesis | 4.56E-05 | GO:0009561 |
| GPI anchor biosynthetic process | 4.56E-05 | GO:0006506 |
| protein N-linked glycosylation | 4.56E-05 | GO:0006487 |
| protein N-glycosylation (eukaryotic, high mannose) | 6.49E-05 | plantCyc |
| Ubiquitin_Proteasome_system, E3 adaptor: Cullin | 0.00012107 | ubs family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000202362 | cazy family |
| Transcription_related, Transcription factor: G2-like | 0.000202362 | TF family |
| ubiquitin protein ligase binding | 0.0003573 | GO:0031625 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000593078 | GO:0042787 |
| N-Glycan biosynthesis | 0.000895358 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.001410883 | KEGG pathway |
| ubiquitin protein ligase activity | 0.001676518 | GO:0061630 |
| endoplasmic reticulum membrane | 0.002654634 | GO:0005789 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006017 | AT1G30910 (5.00E-54) | Molybdenum cofactor sulfurase family protein |
| CRO_T006297 | AT5G06800 (1.00E-20) | myb-like HTH transcriptional regulator family protein |
| CRO_T009042 | AT1G20575 (1.00E-35) | DPMS1|dolichol phosphate mannose synthase 1 |
| CRO_T015255 | AT1G30910 (2.00E-77) | Molybdenum cofactor sulfurase family protein |
| CRO_T016004 | AT2G04660 (0) | APC2|anaphase-promoting complex/cyclosome 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000528 | Transcription_related, Transcription factor: G2-like proteasome complex Proteasome microtubule-severing ATPase activity protein catabolic process peptidase activity calcium ion binding proteolysis cytoplasm | details |
| CFinderADM001446 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication mitotic spindle assembly Ubiquitin_Proteasome_system, E3 adaptor: Cullin gamma-tubulin small complex meiotic nuclear division equatorial microtubule organizing center anaphase-promoting complex gamma-tubulin binding microtubule minus-end binding phosphogluconate dehydrogenase (decarboxylating) activity spindle cytoplasmic microtubule organization megagametogenesis chloroplast structural constituent of cytoskeleton iron-sulfur cluster assembly iron-sulfur cluster binding ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis microtubule NAD binding ubiquitin protein ligase activity iron ion binding | details |
| CFinderADM001949 | Transcription_related, Transcription factor: G2-like ER membrane protein complex protein folding in endoplasmic reticulum glutathione peroxidase activity Arachidonic acid metabolism glutathione-peroxide redox reactions reactive oxygen species degradation intracellular part single-organism metabolic process response to oxidative stress cellular oxidant detoxification Ubiquitin_Proteasome_system, E3 adaptor: DWD oxidoreductase activity | details |
| CFinderADM001980 | Proteasome nucleus dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity positive regulation of circadian rhythm dolichol metabolic process entrainment of circadian clock protein O-linked mannosylation photoperiodism, flowering response to red light red or far-red light signaling pathway protein N-glycosylation (eukaryotic, high mannose) cytosolic proteasome complex proteasome core complex, alpha-subunit complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process protein N-linked glycosylation proteasome regulatory particle, base subcomplex regulation of flower development proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding threonine-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription factor: G2-like N-Glycan biosynthesis calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity Plant-pathogen interaction plasma membrane cytoplasm protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation multicellular organism development ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: ERF protein homodimerization activity peptidase activity calmodulin binding intracellular signal transduction endoplasmic reticulum membrane calcium ion binding ATP binding | details |
Expression profiles
 Show details about module gene expression profiling |