CFinderADM001980's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Proteasome | 1.72E-07 | KEGG pathway |
| nucleus | 2.02E-06 | GO:0005634 |
| dolichyl-phosphate beta-D-mannosyltransferase activity | 0.000173288 | GO:0004582 |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 0.000173288 | GO:0004169 |
| positive regulation of circadian rhythm | 0.000181798 | GO:0042753 |
| dolichol metabolic process | 0.000181798 | GO:0019348 |
| entrainment of circadian clock | 0.000181798 | GO:0009649 |
| protein O-linked mannosylation | 0.000181798 | GO:0035269 |
| photoperiodism, flowering | 0.000193795 | GO:0048573 |
| response to red light | 0.000193795 | GO:0010114 |
| red or far-red light signaling pathway | 0.000193795 | GO:0010017 |
| protein N-glycosylation (eukaryotic, high mannose) | 0.000219641 | plantCyc |
| cytosolic proteasome complex | 0.000230408 | GO:0031597 |
| proteasome core complex, alpha-subunit complex | 0.000230408 | GO:0019773 |
| nuclear proteasome complex | 0.000230408 | GO:0031595 |
| positive regulation of proteasomal protein catabolic process | 0.000272353 | GO:1901800 |
| positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 0.000295796 | GO:0045899 |
| GPI anchor biosynthetic process | 0.000319359 | GO:0006506 |
| protein N-linked glycosylation | 0.000343005 | GO:0006487 |
| proteasome regulatory particle, base subcomplex | 0.000401534 | GO:0008540 |
| regulation of flower development | 0.000615778 | GO:0009909 |
| proteasome-activating ATPase activity | 0.000634189 | GO:0036402 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.000705425 | GO:0030433 |
| TBP-class protein binding | 0.000786227 | GO:0017025 |
| threonine-type endopeptidase activity | 0.001310777 | GO:0004298 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001363574 | cazy family |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.001363574 | kinase family |
| Transcription_related, Transcription factor: G2-like | 0.001363574 | TF family |
| N-Glycan biosynthesis | 0.001774846 | KEGG pathway |
| calmodulin-dependent protein kinase activity | 0.002283468 | GO:0004683 |
| calcium-dependent protein serine/threonine kinase activity | 0.002283468 | GO:0009931 |
| Plant-pathogen interaction | 0.002805208 | KEGG pathway |
| plasma membrane | 0.003335241 | GO:0005886 |
| cytoplasm | 0.003335241 | GO:0005737 |
| protein autophosphorylation | 0.004062732 | GO:0046777 |
| abscisic acid-activated signaling pathway | 0.004062732 | GO:0009738 |
| peptidyl-serine phosphorylation | 0.004270793 | GO:0018105 |
| multicellular organism development | 0.004323019 | GO:0007275 |
| ubiquitin-dependent protein catabolic process | 0.005668949 | GO:0006511 |
| Transcription_related, Transcription factor: ERF | 0.006784831 | TF family |
| protein homodimerization activity | 0.007859773 | GO:0042803 |
| peptidase activity | 0.007859773 | GO:0008233 |
| calmodulin binding | 0.007968383 | GO:0005516 |
| intracellular signal transduction | 0.009203115 | GO:0035556 |
| endoplasmic reticulum membrane | 0.012635226 | GO:0005789 |
| calcium ion binding | 0.030790858 | GO:0005509 |
| ATP binding | 0.048544488 | GO:0005524 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000036 | AT1G17270 (0) | O-fucosyltransferase family protein |
| CRO_T006297 | AT5G06800 (1.00E-20) | myb-like HTH transcriptional regulator family protein |
| CRO_T009042 | AT1G20575 (1.00E-35) | DPMS1|dolichol phosphate mannose synthase 1 |
| CRO_T015528 | AT1G32580 (3.00E-80) | plastid developmental protein DAG, putative |
| CRO_T019229 | AT1G54320 (1.00E-113) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein |
| CRO_T019793 | AT2G38910 (0) | CPK20|calcium-dependent protein kinase 20 |
| CRO_T020694 | AT2G29950 (3.00E-17) | ELF4-L1|ELF4-like 1 |
| CRO_T021391 | AT4G13040 (2.00E-29) | Integrase-type DNA-binding superfamily protein |
| CRO_T025404 | AT3G22110 (5.00E-93) | PAC1|20S proteasome alpha subunit C1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000528 | Transcription_related, Transcription factor: G2-like proteasome complex Proteasome microtubule-severing ATPase activity protein catabolic process peptidase activity calcium ion binding proteolysis cytoplasm | details |
| CFinderADM000672 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 equatorial microtubule organizing center mismatch repair complex gamma-tubulin small complex centrosome duplication nucleotide-sugar transport meiotic nuclear division mitotic spindle assembly interphase microtubule nucleation by interphase microtubule organizing center gamma-tubulin binding microtubule minus-end binding beta-N-acetylhexosaminidase activity cullin-RING ubiquitin ligase complex nucleotide-excision repair Mismatch repair mismatched DNA binding red, far-red light phototransduction cytoplasmic microtubule organization nucleus Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase structural constituent of cytoskeleton calcium-dependent protein serine/threonine kinase activity damaged DNA binding calmodulin-dependent protein kinase activity UDP-glucosyltransferase activity ATP-dependent peptidase activity Transcription_related, Transcription factor: ERF protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation proteasome-mediated ubiquitin-dependent protein catabolic process multicellular organism development microtubule plasma membrane Amino sugar and nucleotide sugar metabolism Plant-pathogen interaction Ubiquitin mediated proteolysis calmodulin binding intracellular signal transduction protein ubiquitination Golgi apparatus calcium ion binding | details |
| CFinderADM000834 | superpathway of thiamine diphosphate biosynthesis III (eukaryotes) thiazole biosynthesis III (eukaryotes) response to red light photoperiodism, flowering thiamine biosynthetic process thiazole biosynthetic process positive regulation of circadian rhythm red or far-red light signaling pathway entrainment of circadian clock Thiamine metabolism proteasome core complex, alpha-subunit complex regulation of flower development Proteasome threonine-type endopeptidase activity response to stress ubiquitin-dependent protein catabolic process nucleus protein homodimerization activity chloroplast stroma oxidoreductase activity nucleic acid binding nucleotide binding | details |
| CFinderADM000835 | phosphomannomutase activity Phagosome GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis proteasome core complex, alpha-subunit complex structural constituent of cytoskeleton threonine-type endopeptidase activity L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II microtubule-based process Proteasome cytoplasm ubiquitin-dependent protein catabolic process microtubule GTPase activity GTP binding carbohydrate metabolic process | details |
| CFinderADM000836 | histone H3-K36 demethylation mRNA pseudouridine synthesis formation of glycosidic bonds, GlycosylTransferases: GTnc histone H3-K36 methylation histone methyltransferase activity (H3-K36 specific) regulation of circadian rhythm mannosyltransferase activity phosphomannomutase activity Transcription_related, Transcription regulator: Jumonji Circadian rhythm GPI anchor biosynthetic process GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis pseudouridine synthase activity glycine cleavage proteasome core complex, alpha-subunit complex threonine-type endopeptidase activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II TCA cycle II (plants and fungi) iron-sulfur cluster assembly tRNA modification Proteasome aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) ubiquitin-dependent protein catabolic process carbohydrate binding catalytic activity endoplasmic reticulum membrane carbohydrate metabolic process transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001168 | N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity red chlorophyll catabolite reductase activity phosphomannomutase activity defense response, incompatible interaction regulation of plant-type hypersensitive response proteasome-activating ATPase activity positive regulation of RNA polymerase II transcriptional preinitiation complex assembly chlorophyll catabolic process positive regulation of proteasomal protein catabolic process chlorophyll a degradation II GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis TBP-class protein binding Other glycan degradation nuclear proteasome complex cytosolic proteasome complex L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis ER-associated ubiquitin-dependent protein catabolic process sucrose biosynthesis II proteasome regulatory particle, base subcomplex cytosol Porphyrin and chlorophyll metabolism Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: HB peptidase activity carbohydrate metabolic process chloroplast envelope chloroplast stroma regulation of transcription, DNA-templated DNA binding | details |
| CFinderADM001169 | Proteasome phosphomannomutase activity GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis cytosolic proteasome complex proteasome core complex, alpha-subunit complex nuclear proteasome complex positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis proteasome-activating ATPase activity sucrose biosynthesis II TBP-class protein binding threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process cytosol Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase peptidyl-serine phosphorylation ubiquitin-dependent protein catabolic process peptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII intracellular signal transduction ATP binding kinase activity catalytic activity carbohydrate metabolic process phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nucleotide binding protein serine/threonine kinase activity | details |
| CFinderADM001447 | molybdenum ion binding pyridoxal phosphate binding catalytic activity dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity dolichol metabolic process protein O-linked mannosylation anaphase-promoting complex spindle megagametogenesis GPI anchor biosynthetic process protein N-linked glycosylation protein N-glycosylation (eukaryotic, high mannose) Ubiquitin_Proteasome_system, E3 adaptor: Cullin formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: G2-like ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process N-Glycan biosynthesis Ubiquitin mediated proteolysis ubiquitin protein ligase activity endoplasmic reticulum membrane | details |
| CFinderADM001584 | protein folding N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity regulation of abscisic acid-activated signaling pathway positive regulation of circadian rhythm entrainment of circadian clock maintenance of seed dormancy response to red light red or far-red light signaling pathway photoperiodism, flowering NOD-like receptor signaling pathway Other glycan degradation regulation of flower development abscisic acid binding sulfate assimilation cellular response to oxidative stress oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor plasma membrane protein disulfide oxidoreductase activity response to stress unfolded protein binding protein homodimerization activity cell redox homeostasis Protein processing in endoplasmic reticulum intracellular membrane-bounded organelle | details |
| CFinderADM001756 | NOD-like receptor signaling pathway entrainment of circadian clock red or far-red light signaling pathway photoperiodism, flowering response to red light positive regulation of circadian rhythm regulation of flower development cellular response to oxidative stress sulfate assimilation transferase activity, transferring hexosyl groups oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity protein homodimerization activity cell redox homeostasis protein folding metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING intracellular membrane-bounded organelle | details |
| CFinderADM001818 | Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity phosphomannomutase activity mannosyltransferase activity Other glycan degradation proteasome-activating ATPase activity positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GPI anchor biosynthetic process positive regulation of proteasomal protein catabolic process GDP-glucose biosynthesis GDP-mannose biosynthesis glucose and glucose-1-phosphate degradation UDP-glucose biosynthesis TBP-class protein binding Glycosylphosphatidylinositol(GPI)-anchor biosynthesis nuclear proteasome complex proteasome core complex, alpha-subunit complex cytosolic proteasome complex threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process L-ascorbate biosynthesis I (L-galactose pathway) starch biosynthesis sucrose biosynthesis II proteasome regulatory particle, base subcomplex ubiquitin-dependent protein catabolic process peptidase activity endoplasmic reticulum membrane carbohydrate metabolic process | details |
| CFinderADM001867 | actin filament polymerization BAT3 complex protein insertion into ER membrane TAT protein transport complex flavin-linked sulfhydryl oxidase activity soluble NSF attachment protein activity syntaxin binding protein secretion membrane fusion Arp2/3 complex-mediated actin nucleation integral component of Golgi membrane Arp2/3 protein complex protein disulfide isomerase activity actin binding extracellular space Protein export SNARE complex protein transporter activity Transcription_related, Transcription factor: ERF Endocytosis multicellular organism development cell redox homeostasis protein folding intracellular protein transport vacuolar membrane chloroplast envelope chloroplast thylakoid membrane transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
| CFinderADM001949 | Transcription_related, Transcription factor: G2-like ER membrane protein complex protein folding in endoplasmic reticulum glutathione peroxidase activity Arachidonic acid metabolism glutathione-peroxide redox reactions reactive oxygen species degradation intracellular part single-organism metabolic process response to oxidative stress cellular oxidant detoxification Ubiquitin_Proteasome_system, E3 adaptor: DWD oxidoreductase activity | details |
| CFinderADM001953 | Protein digestion and absorption serine-type peptidase activity Transcription_related, Transcription factor: ERF vesicle-mediated transport multicellular organism development nucleus transcription factor activity, sequence-specific DNA binding proteolysis transcription, DNA-templated DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM001954 | rRNA (uridine-2'-O-)-methyltransferase activity enzyme-directed rRNA 2'-O-methylation Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex ubiquitin protein ligase binding Ubiquitin mediated proteolysis Transcription_related, Transcription factor: ERF protein ubiquitination involved in ubiquitin-dependent protein catabolic process multicellular organism development vesicle-mediated transport ubiquitin protein ligase activity transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |