CFinderADM001471's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| aging | 2.15E-05 | GO:0007568 |
| shoot system development | 6.43E-05 | GO:0048367 |
| reproductive structure development | 6.55E-05 | GO:0048608 |
| single organism reproductive process | 0.000121365 | GO:0044702 |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 0.000124097 | plantCyc |
| pyrimidine ribonucleotides interconversion | 0.000322033 | plantCyc |
| Transcription_related, Transcription factor: NAC | 0.000646855 | TF family |
| Purine metabolism | 0.002677365 | KEGG pathway |
| transmembrane transport | 0.015071237 | GO:0055085 |
| transcription, DNA-templated | 0.016324432 | GO:0006351 |
| DNA binding | 0.035078916 | GO:0003677 |
| regulation of transcription, DNA-templated | 0.038821459 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012391 | AT1G29840 (2.00E-55) | alpha/beta-Hydrolases superfamily protein |
| CRO_T013907 | AT1G14230 (7.00E-136) | GDA1/CD39 nucleoside phosphatase family protein |
| CRO_T016002 | AT1G69490 (7.00E-89) | ANAC029|Arabidopsis NAC domain containing protein 29; ATNAP|NAC-LIKE, ACTIVATED BY AP3/PI |
| CRO_T021592 | AT2G27770 (8.00E-57) | Plant protein of unknown function (DUF868) |
| CRO_T032662 | AT2G28120 (0) | Major facilitator superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000077 | dTTP biosynthetic process autophagic cell death dTDP biosynthetic process branched-chain amino acid catabolic process dUDP biosynthetic process phosphatidylinositol-3,5-bisphosphate binding isovaleryl-CoA dehydrogenase activity growth factor activity thymidylate kinase activity protein lipidation phosphatidylinositol-3-phosphate binding protein localization to pre-autophagosomal structure mitophagy leucine catabolic process myo-inositol:proton symporter activity uridylate kinase activity nucleophagy myo-inositol transport Valine, leucine and isoleucine degradation leaf senescence lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response cell proliferation pre-autophagosomal structure membrane extracellular region L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) response to starvation fatty-acyl-CoA binding chitin binding pyrimidine deoxyribonucleotides de novo biosynthesis I Circadian rhythm - plant cytokinin-O-glucosides biosynthesis L-valine degradation I chitin catabolic process chitinase activity Pyrimidine metabolism glucose transmembrane transport Transcription_related, Transcription factor: Orphans phosphorelay signal transduction system glucose import response to water deprivation glucose transmembrane transporter activity extrinsic component of membrane sugar:proton symporter activity proton transport mitochondrial matrix quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid glucuronidation flavonoid biosynthetic process electron carrier activity flavin adenine dinucleotide binding transporter activity cytosol | details |
| CFinderADM000711 | Influenza A uroporphyrinogen-III synthase activity UDP-galactose transmembrane transporter activity formamidase activity UDP-glucose transmembrane transporter activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides root hair cell development UDP-galactose transmembrane transport production of miRNAs involved in gene silencing by miRNA aging histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase ncRNA processing lateral root development tetrapyrrole biosynthetic process UDP-glucose transport NuA4 histone acetyltransferase complex nuclear pore inner ring nuclear pore organization shoot system development reproductive structure development protein import into nucleus, docking Carbon metabolism Stilbenoid, diarylheptanoid and gingerol biosynthesis structural constituent of nuclear pore myricetin 3'-O-methyltransferase activity 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity single organism reproductive process regulation of flower development alkaloid biosynthetic process cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis aromatic compound biosynthetic process cellular response to oxidative stress sulfate assimilation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Transcription_related, Transcription factor: PLATZ quercetin glucoside biosynthesis (Allium) Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: PHD Ubiquitin_Proteasome_system, E3: RING syringetin biosynthesis quercetin gentiotetraside biosynthesis phenylpropanoids methylation (ice plant) protein disulfide oxidoreductase activity protein homodimerization activity quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity cell redox homeostasis regulation of transcription, DNA-templated flavonoid glucuronidation Transcription_related, Transcription factor: NAC flavonoid biosynthetic process intracellular signal transduction | details |
| CFinderADM001060 | growth factor activity myo-inositol:proton symporter activity myo-inositol transport cell proliferation pyrimidine deoxyribonucleotides de novo biosynthesis I protein-cysteine S-palmitoyltransferase activity pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: BTB glucose transmembrane transport sugar:proton symporter activity glucose transmembrane transporter activity glucose import proton transport Purine metabolism membrane integral component of plasma membrane extracellular region | details |
| CFinderADM001180 | pyrimidine deoxyribonucleotides de novo biosynthesis I dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process branched-chain amino acid catabolic process isovaleryl-CoA dehydrogenase activity thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors argininosuccinate metabolic process argininosuccinate synthase activity inositol hexakisphosphate binding tRNA methyltransferase activity Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family leucine catabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) uridylate kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis II rRNA methyltransferase activity L-arginine biosynthesis II (acetyl cycle) L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) rRNA base methylation lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response fatty-acyl-CoA binding glucan endo-1,3-beta-D-glucosidase activity Valine, leucine and isoleucine degradation zinc ion binding transcription coactivator activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX L-valine degradation I tRNA methylation arginine biosynthetic process iron-sulfur cluster binding transcription from RNA polymerase II promoter pyrimidine ribonucleotides interconversion vindoline and vinblastine biosynthesis positive regulation of transcription, DNA-templated auxin-activated signaling pathway metalloendopeptidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3: RING single-organism metabolic process protein serine/threonine phosphatase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Pyrimidine metabolism cell mitochondrial matrix Transcription_related, Transcription factor: bHLH protein dephosphorylation | details |
| CFinderADM001465 | tRNA methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc rRNA base methylation rRNA methyltransferase activity tRNA methylation pyrimidine deoxyribonucleotides de novo biosynthesis I iron-sulfur cluster binding beta-galactosidase activity pyrimidine ribonucleotides interconversion Galactose metabolism Purine metabolism carbohydrate metabolic process nucleic acid binding | details |
| CFinderADM001714 | Transcription_related, Transcription factor: B3 hydrogen peroxide catabolic process plant-type cell wall organization Phenylpropanoid biosynthesis response to oxidative stress cellular oxidant detoxification peroxidase activity plant-type cell wall extracellular region Ubiquitin_Proteasome_system, E3: RING transmembrane transport heme binding | details |
| CFinderADM001986 | protein ADP-ribosylation DNA ligation involved in DNA repair lagging strand elongation Base excision repair Transcription_related, Transcription factor: MIKC NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity DNA binding nucleus NAD binding protein dimerization activity kinase activity phosphorylation transmembrane transport transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |