CFinderADM001465's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA methyltransferase activity | 4.39E-05 | GO:0008175 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 4.94E-05 | cazy family |
| rRNA base methylation | 5.19E-05 | GO:0070475 |
| rRNA methyltransferase activity | 5.26E-05 | GO:0008649 |
| tRNA methylation | 8.82E-05 | GO:0030488 |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 0.000124097 | plantCyc |
| iron-sulfur cluster binding | 0.000201259 | GO:0051536 |
| beta-galactosidase activity | 0.000201259 | GO:0004565 |
| pyrimidine ribonucleotides interconversion | 0.000322033 | plantCyc |
| Galactose metabolism | 0.000365604 | KEGG pathway |
| Purine metabolism | 0.003718562 | KEGG pathway |
| carbohydrate metabolic process | 0.007379079 | GO:0005975 |
| nucleic acid binding | 0.017769336 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000602 | AT3G19630 (8.00E-160) | Radical SAM superfamily protein |
| CRO_T012234 | AT5G58160 (2.00E-175) | actin binding |
| CRO_T013907 | AT1G14230 (7.00E-136) | GDA1/CD39 nucleoside phosphatase family protein |
| CRO_T029414 | AT1G72990 (0) | BGAL17|beta-galactosidase 17 |
| CRO_T033162 | AT5G24450 (2.00E-56) | Transcription factor IIIC, subunit 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001060 | growth factor activity myo-inositol:proton symporter activity myo-inositol transport cell proliferation pyrimidine deoxyribonucleotides de novo biosynthesis I protein-cysteine S-palmitoyltransferase activity pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: BTB glucose transmembrane transport sugar:proton symporter activity glucose transmembrane transporter activity glucose import proton transport Purine metabolism membrane integral component of plasma membrane extracellular region | details |
| CFinderADM001179 | molybdopterin synthase complex carbohydrate metabolic process Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-galactosidase activity glucan endo-1,3-beta-D-glucosidase activity Galactose metabolism metalloendopeptidase activity 4 iron, 4 sulfur cluster binding zinc ion binding metal ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: FAR1 Starch and sucrose metabolism Protein processing in endoplasmic reticulum proteolysis catalytic activity nucleic acid binding mitochondrion regulation of transcription, DNA-templated | details |
| CFinderADM001180 | pyrimidine deoxyribonucleotides de novo biosynthesis I dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process branched-chain amino acid catabolic process isovaleryl-CoA dehydrogenase activity thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors argininosuccinate metabolic process argininosuccinate synthase activity inositol hexakisphosphate binding tRNA methyltransferase activity Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family leucine catabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) uridylate kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis II rRNA methyltransferase activity L-arginine biosynthesis II (acetyl cycle) L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) rRNA base methylation lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response fatty-acyl-CoA binding glucan endo-1,3-beta-D-glucosidase activity Valine, leucine and isoleucine degradation zinc ion binding transcription coactivator activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX L-valine degradation I tRNA methylation arginine biosynthetic process iron-sulfur cluster binding transcription from RNA polymerase II promoter pyrimidine ribonucleotides interconversion vindoline and vinblastine biosynthesis positive regulation of transcription, DNA-templated auxin-activated signaling pathway metalloendopeptidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3: RING single-organism metabolic process protein serine/threonine phosphatase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Pyrimidine metabolism cell mitochondrial matrix Transcription_related, Transcription factor: bHLH protein dephosphorylation | details |
| CFinderADM001347 | small GTPase mediated signal transduction GTP binding intracellular | details |
| CFinderADM001471 | aging shoot system development reproductive structure development single organism reproductive process pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Transcription_related, Transcription factor: NAC Purine metabolism transmembrane transport transcription, DNA-templated DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM001810 | small GTPase mediated signal transduction intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001903 | clathrin coat of coated pit clathrin coat of trans-Golgi network vesicle cytidine to uridine editing clathrin-mediated endocytosis L-leucine degradation I protein import into peroxisome matrix leucine catabolic process fatty acid beta-oxidation clathrin heavy chain binding Valine, leucine and isoleucine degradation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SCF ubiquitin ligase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Galactose metabolism Peroxisome beta-galactosidase activity structural molecule activity cobalt ion binding intracellular protein transport ligase activity ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular carbohydrate metabolic process nucleic acid binding hydrolase activity | details |
| CFinderADM002019 | cytidine to uridine editing Transcription_related, Transcription factor: Alfin-like nucleotide-excision repair hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc damaged DNA binding histone binding beta-galactosidase activity Galactose metabolism proteasome-mediated ubiquitin-dependent protein catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein processing in endoplasmic reticulum carbohydrate metabolic process nucleic acid binding regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |