CFinderADM001506's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: RING | 5.09E-06 | ubs family |
| exocyst localization | 1.46E-05 | GO:0051601 |
| exocyst assembly | 1.46E-05 | GO:0001927 |
| copper ion export | 1.46E-05 | GO:0060003 |
| copper-exporting ATPase activity | 4.39E-05 | GO:0004008 |
| protein polyubiquitination | 0.000408437 | GO:0000209 |
| zinc ion binding | 0.00050464 | GO:0008270 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000711693 | GO:0042787 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.000799283 | GO:0043161 |
| exocyst | 0.000874902 | GO:0000145 |
| MAPK signaling pathway - plant | 0.001415026 | KEGG pathway |
| copper ion binding | 0.003638028 | GO:0005507 |
| ubiquitin protein ligase activity | 0.003638028 | GO:0061630 |
| intracellular membrane-bounded organelle | 0.015450981 | GO:0043231 |
| integral component of plasma membrane | 0.015450981 | GO:0005887 |
| RNA binding | 0.017982732 | GO:0003723 |
| nucleotide binding | 0.027553085 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002686 | AT4G33520 (4.00E-61) | AtHMAC6|heavy metal ATPase 6; PAA1|P-type ATP-ase 1 |
| CRO_T007850 | AT1G75400 (4.00E-61) | RING/U-box superfamily protein |
| CRO_T009800 | - | - |
| CRO_T024213 | AT1G10385 (0) | Vps51/Vps67 family (components of vesicular transport) protein |
| CRO_T032608 | AT1G09660 (9.00E-22) | RNA-binding KH domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000738 | cytosol adenosine catabolic process hypoxanthine salvage inosine biosynthetic process exocyst localization exocyst assembly adenosine deaminase activity 1-phosphatidylinositol 4-kinase activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis exocyst phosphatidylinositol phosphorylation protein polyubiquitination response to salt stress protein autophosphorylation protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING protein serine/threonine kinase activity | details |
| CFinderADM000843 | Ubiquitin_Proteasome_system, DUB: OTU RNA binding oxidoreductase activity protein serine/threonine kinase activity | details |
| CFinderADM000935 | tRNA wobble position uridine thiolation protein urmylation enzyme active site formation via cysteine modification to L-cysteine persulfide mitochondrial translational termination protein adenylylation thiosulfate sulfurtransferase activity protein adenylyltransferase activity URM1 activating enzyme activity GTPase activity extrinsic component of plastid membrane Sulfur relay system molybdenum cofactor biosynthesis Mo-molybdopterin cofactor biosynthetic process chloroplast fission ribosomal large subunit binding protein self-association chloroplast outer membrane Ubiquitin_Proteasome_system, E1: ThiF chaperone binding RNA binding Ubiquitin_Proteasome_system, DUB: OTU ribosome biogenesis RNA secondary structure unwinding Ribosome biogenesis in eukaryotes ATP-dependent RNA helicase activity | details |
| CFinderADM001171 | xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc membrane Ubiquitin_Proteasome_system, E3: RING zinc ion binding | details |
| CFinderADM001701 | histidinol dehydrogenase activity L-histidine biosynthesis exocyst localization exocyst assembly histidine biosynthetic process pollen development Biosynthesis of amino acids exocyst NAD binding chloroplast thylakoid transport chloroplast envelope chloroplast stroma | details |
| CFinderADM002082 | copper ion export plastid organization translational termination copper-exporting ATPase activity Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase translation release factor activity, codon specific ribosome binding RNA processing Plant-pathogen interaction MAPK signaling pathway - plant copper ion binding Ubiquitin_Proteasome_system, E3: RING integral component of plasma membrane intracellular membrane-bounded organelle chloroplast stroma protein phosphorylation integral component of membrane protein serine/threonine kinase activity nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |