CFinderADM001554's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| basal plasma membrane | 1.28E-05 | GO:0009925 |
| apical part of cell | 1.28E-05 | GO:0045177 |
| inorganic anion exchanger activity | 2.56E-05 | GO:0005452 |
| leaf shaping | 2.82E-05 | GO:0010358 |
| cotyledon morphogenesis | 2.82E-05 | GO:0048826 |
| leaf formation | 2.82E-05 | GO:0010338 |
| inflorescence development | 2.82E-05 | GO:0010229 |
| transmembrane transport | 2.82E-05 | GO:0055085 |
| inorganic anion transport | 3.29E-05 | GO:0015698 |
| gravitropism | 4.84E-05 | GO:0009630 |
| xylem and phloem pattern formation | 5.29E-05 | GO:0010051 |
| regulation of intracellular pH | 9.51E-05 | GO:0051453 |
| anion transmembrane transport | 0.000112792 | GO:0098656 |
| flower development | 0.000299406 | GO:0009908 |
| auxin polar transport | 0.000438175 | GO:0009926 |
| transmembrane transporter activity | 0.000476957 | GO:0022857 |
| root development | 0.000506529 | GO:0048364 |
| cell part | 0.000533508 | GO:0044464 |
| auxin-activated signaling pathway | 0.000603684 | GO:0009734 |
| Transcription_related, Transcription factor: bHLH | 0.000773274 | TF family |
| regulation of cellular process | 0.001138616 | GO:0050794 |
| plant-type cell wall | 0.003197285 | GO:0009505 |
| protein dimerization activity | 0.003480129 | GO:0046983 |
| integral component of plasma membrane | 0.006807264 | GO:0005887 |
| plasmodesma | 0.011075378 | GO:0009506 |
| DNA binding | 0.042373104 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004759 | AT3G21330 (5.00E-17) | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| CRO_T010913 | AT1G15460 (0) | ATBOR4|REQUIRES HIGH BORON 4 |
| CRO_T014231 | AT1G70940 (0) | ATPIN3|ARABIDOPSIS PIN-FORMED 3; PIN3|PIN-FORMED 3 |
| CRO_T014501 | AT2G25690 (8.00E-17) | Protein of unknown function (DUF581) |
| CRO_T030330 | AT1G75500 (9.00E-135) | UMAMIT5|Usually multiple acids move in and out Transporters 5; WAT1|Walls Are Thin 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000721 | integral component of membrane apical part of cell basal plasma membrane cotyledon morphogenesis leaf shaping inflorescence development leaf formation gravitropism xylem and phloem pattern formation Transcription_related, Transcription factor: bZIP flower development auxin polar transport root development auxin-activated signaling pathway plant-type cell wall plasmodesma sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding transmembrane transport | details |
| CFinderADM000925 | calcium-dependent phospholipid binding transmembrane transporter activity plasma membrane calcium ion binding transmembrane transport cell part integral component of membrane transferase activity, transferring glycosyl groups regulation of cellular process hydrolase activity, hydrolyzing O-glycosyl compounds Plant hormone signal transduction sequence-specific DNA binding endoplasmic reticulum plasmodesma transcription factor activity, sequence-specific DNA binding carbohydrate metabolic process transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM000926 | transmembrane transporter activity transmembrane transport inorganic anion exchanger activity nucleoside transmembrane transporter activity inorganic anion transport nucleoside transmembrane transport Transcription_related, Transcription factor: C2C2-Dof regulation of intracellular pH anion transmembrane transport integral component of membrane cell part plasma membrane regulation of cellular process transporter activity serine-type endopeptidase activity integral component of plasma membrane cell wall transport proteolysis | details |
| CFinderADM001337 | anchored component of membrane N,N-dimethylaniline monooxygenase activity Transcription_related, Transcription factor: bHLH NADP binding flavin adenine dinucleotide binding protein dimerization activity DNA binding | details |
| CFinderADM001397 | apical part of cell basal plasma membrane cotyledon morphogenesis leaf formation inflorescence development leaf shaping gravitropism xylem and phloem pattern formation regulation of transcription, DNA-templated flower development auxin polar transport Transcription_related, Transcription factor: bZIP root development auxin-activated signaling pathway Transcription_related, Transcription factor: MYB plant-type cell wall plasmodesma transmembrane transport transcription, DNA-templated sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding integral component of membrane | details |
| CFinderADM001778 | flower development auxin-activated signaling pathway inorganic anion exchanger activity cotyledon morphogenesis apical part of cell basal plasma membrane inflorescence development leaf formation leaf shaping transcription, DNA-templated inorganic anion transport gravitropism response to bacterium xylem and phloem pattern formation Transcription_related, Transcription factor: ARF DNA binding regulation of intracellular pH anion transmembrane transport regulation of transcription, DNA-templated auxin polar transport root development Transcription_related, Transcription factor: MYB nucleus plant-type cell wall integral component of plasma membrane plasmodesma transmembrane transport | details |
Expression profiles
 Show details about module gene expression profiling |