CFinderADM001560's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: VOZ | 1.04E-05 | TF family |
| CURI complex | 1.40E-05 | GO:0032545 |
| UTP-C complex | 1.40E-05 | GO:0034456 |
| protein ubiquitination | 1.74E-05 | GO:0016567 |
| tRNA export from nucleus | 1.93E-05 | GO:0006409 |
| long-day photoperiodism, flowering | 2.58E-05 | GO:0048574 |
| positive regulation of long-day photoperiodism, flowering | 3.22E-05 | GO:0048578 |
| defense response to bacterium, incompatible interaction | 5.41E-05 | GO:0009816 |
| cold acclimation | 7.73E-05 | GO:0009631 |
| Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX | 7.76E-05 | kinase family |
| response to heat | 0.000743613 | GO:0009408 |
| positive regulation of transcription, DNA-templated | 0.001153904 | GO:0045893 |
| response to water deprivation | 0.001153904 | GO:0009414 |
| rRNA processing | 0.001153904 | GO:0006364 |
| small-subunit processome | 0.002031516 | GO:0032040 |
| intracellular part | 0.002031516 | GO:0044424 |
| Ribosome biogenesis in eukaryotes | 0.002831867 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.002831867 | KEGG pathway |
| ubiquitin protein ligase binding | 0.005042269 | GO:0031625 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.013511008 | ubs family |
| ubiquitin protein ligase activity | 0.015143866 | GO:0061630 |
| ubiquitin-protein transferase activity | 0.015389348 | GO:0004842 |
| Ubiquitin_Proteasome_system, E3: RING | 0.02792595 | ubs family |
| sequence-specific DNA binding | 0.027934286 | GO:0043565 |
| protein kinase activity | 0.039224765 | GO:0004672 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003297 | AT1G49540 (0) | AtELP2|Elongator subunit 2; ELP2|elongator protein 2 |
| CRO_T009507 | - | - |
| CRO_T014818 | AT3G45470 (4.00E-20) | IBR domain containing protein |
| CRO_T017570 | AT1G28520 (6.00E-165) | ATVOZ1|VASCULAR PLANT ONE ZINC FINGER PROTEIN |
| CRO_T023313 | - | - |
| CRO_T030263 | AT3G57120 (4.00E-119) | Protein kinase superfamily protein |
| CRO_T032078 | AT1G63810 (6.00E-87) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000739 | tRNA export from nucleus Protein_kinases_phosphatases, PPC:4.1.3: MAP2K CURI complex UTP-C complex MAP kinase kinase activity receptor signaling protein serine/threonine kinase activity rRNA processing MAPK cascade small-subunit processome helicase activity protein binding MAPK signaling pathway - plant Ribosome biogenesis in eukaryotes ATP binding nucleic acid binding | details |
| CFinderADM001484 | regulation of autophagy endoplasmic reticulum organization calcium:proton antiporter activity Autophagy - animal pre-autophagosomal structure calcium ion transmembrane transport Golgi organization ajmaline and sarpagine biosynthesis exocytosis benzoate biosynthesis I (CoA-dependent, β-oxidative) intracellular part hydrolase activity, acting on ester bonds protein ubiquitination ubiquitin-protein transferase activity endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING integral component of membrane | details |
| CFinderADM001561 | microfibril ubiquitin protein ligase binding Ubiquitin mediated proteolysis ubiquitin protein ligase activity protein ubiquitination | details |
| CFinderADM001716 | rRNA modification box C/D snoRNP complex DNA-directed DNA polymerase activity snoRNA binding DNA biosynthetic process Transcription_related, Transcription regulator: mTERF DNA replication small-subunit processome Ribosome biogenesis in eukaryotes cytoplasmic part Purine metabolism Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular membrane-bounded organelle DNA binding | details |
| CFinderADM001879 | putrescine biosynthesis II Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX arginine decarboxylase activity arginine catabolic process cellular protein localization spermidine biosynthetic process Arginine and proline metabolism Insulin signaling pathway 3'-5' exonuclease activity cellular transition metal ion homeostasis ribosome biogenesis metal ion transport exocytosis response to salt stress exocyst transition metal ion binding nucleic acid phosphodiester bond hydrolysis signal transduction GTPase activity GTP binding protein kinase activity nucleic acid binding | details |
| CFinderADM002022 | 5'-nucleotidase activity guanosine nucleotides degradation I guanosine nucleotides degradation II Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX pyrimidine salvage pathway Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase adenosine nucleotides degradation I adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: ERF dephosphorylation binding transcription factor activity, sequence-specific DNA binding protein kinase activity transcription, DNA-templated | details |
| CFinderADM002091 | Transcription_related, Transcription regulator: Rcd1-like CCR4-NOT core complex response to glucose mRNA catabolic process negative regulation of translation zinc ion binding cytoplasmic mRNA processing body defense response to fungus response to salt stress RNA degradation response to abscisic acid mitochondrion | details |
| CFinderADM002106 | formation of glycosidic bonds, GlycosylTransferases: GTnc beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity microtubule plus-end binding coenzyme A transmembrane transporter activity tRNA export from nucleus negative regulation of microtubule depolymerization CURI complex UTP-C complex coenzyme A transmembrane transport cortical microtubule organization cell cortex spindle microtubule protein stabilization lipase activity protein N-linked glycosylation mitotic nuclear division cell growth phragmoplast integral component of membrane rRNA processing N-Glycan biosynthesis Ribosome biogenesis in eukaryotes small-subunit processome lipid metabolic process mitochondrial inner membrane plasmodesma structural constituent of ribosome translation | details |
| CFinderADM002177 | Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX cellular protein localization Fanconi anemia pathway cellular transition metal ion homeostasis response to salt stress metal ion transport transition metal ion binding signal transduction MAPK signaling pathway - plant protein kinase activity protein phosphorylation | details |
| CFinderADM002217 | mannose-1-phosphate guanylyltransferase (GDP) activity GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Fructose and mannose metabolism NF-kappa B signaling pathway Phenylpropanoid biosynthesis biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002256 | Transcription_related, Transcription factor: VOZ glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc single organismal cell-cell adhesion pectic galactan metabolic process long-day photoperiodism, flowering positive regulation of long-day photoperiodism, flowering defense response to bacterium, incompatible interaction glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process ubiquinone biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity cold acclimation extrinsic component of mitochondrial inner membrane phloem or xylem histogenesis response to heat response to water deprivation positive regulation of transcription, DNA-templated response to abscisic acid trans-Golgi network endosome sequence-specific DNA binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM002257 | Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX ribosome biogenesis Ubiquitin_Proteasome_system, E3 adaptor: F-box GTPase activity GTP binding protein kinase activity protein phosphorylation | details |
| CFinderADM002258 | Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Ubiquitin_Proteasome_system, E3 adaptor: F-box protein kinase activity protein phosphorylation | details |
| CFinderADM002269 | CURI complex UTP-C complex tRNA export from nucleus regulation of circadian rhythm Legionellosis protein lipoylation Transcription_related, Transcription factor: HSF ribonuclease P activity tRNA processing spliceosomal complex vegetative to reproductive phase transition of meristem glutathione transferase activity translation elongation factor activity RNA phosphodiester bond hydrolysis, endonucleolytic translational elongation positive regulation of transcription, DNA-templated glutathione metabolic process rRNA processing mRNA splicing, via spliceosome small-subunit processome Ribosome biogenesis in eukaryotes vacuole nucleolus RNA transport Spliceosome DNA binding | details |
| CFinderADM002306 | response to stress | details |
Expression profiles
 Show details about module gene expression profiling |