CFinderADM001566's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| acid-amino acid ligase activity | 1.76E-05 | GO:0016881 |
| ATP binding | 2.09E-05 | GO:0005524 |
| nucleoid | 8.19E-05 | GO:0009295 |
| plastid chromosome | 0.000132924 | GO:0009508 |
| transcription from plastid promoter | 0.000135791 | GO:0042793 |
| chloroplast fission | 0.000135791 | GO:0010020 |
| chloroplast | 0.00019827 | GO:0009507 |
| regulation of cell shape | 0.000281102 | GO:0008360 |
| ATP-dependent peptidase activity | 0.000315887 | GO:0004176 |
| metalloendopeptidase activity | 0.000656498 | GO:0004222 |
| positive regulation of transcription, DNA-templated | 0.000726078 | GO:0045893 |
| RNA secondary structure unwinding | 0.000726078 | GO:0010501 |
| cell division | 0.000726078 | GO:0051301 |
| biosynthetic process | 0.000726078 | GO:0009058 |
| ATP-dependent RNA helicase activity | 0.001168661 | GO:0004004 |
| embryo development ending in seed dormancy | 0.002177956 | GO:0009793 |
| chloroplast envelope | 0.008381025 | GO:0009941 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009496679 | cazy family |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.009496679 | ubs family |
| proteolysis | 0.013931715 | GO:0006508 |
| nucleic acid binding | 0.017769336 | GO:0003676 |
| mitochondrion | 0.044494188 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001621 | AT1G67190 (3.00E-172) | F-box/RNI-like superfamily protein |
| CRO_T012891 | AT1G79560 (0) | EMB1047|EMBRYO DEFECTIVE 1047; EMB156|EMBRYO DEFECTIVE 156; EMB36|EMBRYO DEFECTIVE 36; FTSH12|FTSH protease 12 |
| CRO_T022881 | AT4G09730 (4.00E-87) | RH39|RH39 |
| CRO_T031737 | AT1G74850 (0) | PDE343|PIGMENT DEFECTIVE 343; PTAC2|plastid transcriptionally active 2 |
| CRO_T032982 | AT1G63680 (6.00E-26) | APG13|ALBINO OR PALE-GREEN 13; PDE316|PIGMENT DEFECTIVE EMBRYO 316 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM002035 | Transcription_related, Transcription factor: NF-YC membrane fusion Antigen processing and presentation SNARE interactions in vesicular transport metalloendopeptidase activity ATP-dependent peptidase activity SNAP receptor activity microtubule motor activity microtubule binding ATPase activity protein heterodimerization activity kinesin complex microtubule-based movement vesicle-mediated transport embryo development ending in seed dormancy ATP binding intracellular protein transport chloroplast envelope Golgi apparatus proteolysis oxidoreductase activity integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |