CFinderADM001570's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of ruffle assembly | 1.50E-05 | GO:1900027 |
| ruffle membrane | 1.50E-05 | GO:0032587 |
| protein metabolic process | 5.63E-05 | GO:0019538 |
| fatty acid elongation -- saturated | 0.000153827 | plantCyc |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.000194934 | plantCyc |
| protein histidine kinase binding | 0.000222384 | GO:0043424 |
| phosphatidylinositol binding | 0.000425313 | GO:0035091 |
| Transcription_related, Transcription regulator: mTERF | 0.00044411 | TF family |
| Transcription_related, Transcription factor: WRKY | 0.000582798 | TF family |
| glutathione metabolic process | 0.000679787 | GO:0006749 |
| glutathione transferase activity | 0.000827839 | GO:0004364 |
| Fatty acid metabolism | 0.000868744 | KEGG pathway |
| Glutathione metabolism | 0.000868744 | KEGG pathway |
| palmitate biosynthesis II (bacteria and plants) | 0.000923374 | plantCyc |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.001151438 | GO:0016747 |
| fatty acid biosynthetic process | 0.001408846 | GO:0006633 |
| chloroplast envelope | 0.011880829 | GO:0009941 |
| chloroplast stroma | 0.020963906 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002099 | AT1G29800 (0) | RING/FYVE/PHD-type zinc finger family protein |
| CRO_T002448 | AT1G21150 (4.00E-31) | Mitochondrial transcription termination factor family protein |
| CRO_T009159 | AT5G46290 (1.00E-173) | KAS1|KETOACYL-ACP SYNTHASE 1; KASI|3-ketoacyl-acyl carrier protein synthase I |
| CRO_T013826 | AT4G26440 (4.00E-15) | MSP3|MICROSPORE-SPECIFIC PROMOTER 3; WRKY34|WRKY DNA-binding protein 34 |
| CRO_T026596 | AT4G12060 (2.00E-67) | Double Clp-N motif protein |
| CRO_T032092 | AT1G57720 (1.00E-10) | Translation elongation factor EF1B, gamma chain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000573 | 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process flavin biosynthesis I (bacteria and plants) Transcription_related, Transcription factor: WRKY cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis S-adenosylmethionine-dependent methyltransferase activity trans-Golgi network vacuolar membrane endosome methylation transferase activity chloroplast stroma | details |
| CFinderADM001008 | nucleobase-containing compound biosynthetic process barrier septum site selection regulation of ruffle assembly pyrimidine deoxyribonucleosides salvage innate immune response ruffle membrane calcium-dependent ATPase activity transport of virus in host, cell to cell chloroplast fission positive regulation of RNA polymerase II transcriptional preinitiation complex assembly phosphate-containing compound metabolic process cytosolic proteasome complex nuclear proteasome complex nucleotide phosphorylation proteasome regulatory particle, base subcomplex myosin complex adenylate kinase activity ATP binding proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process adenosine ribonucleotides de novo biosynthesis TBP-class protein binding motor activity Pyrimidine metabolism phosphatidylinositol binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation nucleotide binding Transcription_related, Transcription factor: M-type actin binding DNA binding protein homodimerization activity response to oxidative stress methyltransferase activity Purine metabolism | details |
| CFinderADM001009 | ruffle membrane regulation of ruffle assembly response to starvation phosphatidylinositol binding metal ion binding vesicle-mediated transport Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001631 | ruffle membrane nucleobase-containing compound biosynthetic process regulation of ruffle assembly pyrimidine deoxyribonucleosides salvage cytokinin metabolic process Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family phosphate-containing compound metabolic process cytokinin dehydrogenase activity Pyrimidine metabolism Zeatin biosynthesis phosphatidylinositol binding oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding kinase activity protein phosphorylation protein serine/threonine kinase activity nucleotide binding | details |
| CFinderADM002030 | Nucleotide excision repair Selenocompound metabolism S-adenosylmethionine metabolic process selenium compound metabolic process protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity transaminase activity Transcription_related, Transcription regulator: mTERF Transcription_related, Transcription factor: WRKY biosynthetic process S-adenosylmethionine-dependent methyltransferase activity mRNA surveillance pathway signal transduction pyridoxal phosphate binding methylation cytosol | details |
| CFinderADM002144 | inositol pentakisphosphate 2-kinase activity lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) cellular protein modification process lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) inositol pyrophosphates biosynthesis Transcription_related, Transcription regulator: mTERF 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) protein transport Inositol phosphate metabolism Endocytosis phosphorylation | details |
| CFinderADM002145 | inositol pentakisphosphate 2-kinase activity lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) cellular nitrogen compound metabolic process lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) inositol pyrophosphates biosynthesis gene expression Transcription_related, Transcription regulator: mTERF cellular macromolecule metabolic process 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) Inositol phosphate metabolism intracellular part microtubule primary metabolic process cell division embryo development ending in seed dormancy GTPase activity phosphorylation RNA binding | details |
| CFinderADM002302 | diaminopimelate decarboxylase activity rRNA (cytosine-N4-)-methyltransferase activity regulation of ruffle assembly ruffle membrane daphnetin modification rRNA base methylation protein metabolic process lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI protein histidine kinase binding phosphatidylinositol binding Biosynthesis of amino acids transferase activity, transferring glycosyl groups membrane formation of glycosidic bonds, GlycosylTransferases: GTnc chloroplast envelope chloroplast stroma | details |
Expression profiles
 Show details about module gene expression profiling |