CFinderADM000573's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 6,7-dimethyl-8-ribityllumazine synthase activity | 7.52E-06 | GO:0000906 |
| riboflavin synthase complex | 1.29E-05 | GO:0009349 |
| Riboflavin metabolism | 5.27E-05 | KEGG pathway |
| riboflavin biosynthetic process | 7.48E-05 | GO:0009231 |
| flavin biosynthesis I (bacteria and plants) | 0.000382243 | plantCyc |
| Transcription_related, Transcription factor: WRKY | 0.000419615 | TF family |
| cutin biosynthesis | 0.000646754 | plantCyc |
| sporopollenin precursors biosynthesis | 0.000646754 | plantCyc |
| suberin monomers biosynthesis | 0.000920765 | plantCyc |
| S-adenosylmethionine-dependent methyltransferase activity | 0.002495587 | GO:0008757 |
| trans-Golgi network | 0.005314868 | GO:0005802 |
| vacuolar membrane | 0.005314868 | GO:0005774 |
| endosome | 0.005314868 | GO:0005768 |
| methylation | 0.005906236 | GO:0032259 |
| transferase activity | 0.02081038 | GO:0016740 |
| chloroplast stroma | 0.023936291 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000729 | AT2G38800 (9.00E-12) | Plant calmodulin-binding protein-related |
| CRO_T002190 | AT1G04430 (1.00E-177) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T012412 | AT2G44050 (3.00E-67) | COS1|COI1 SUPPRESSOR1; COS1|coronatine insensitive1 suppressor |
| CRO_T013826 | AT4G26440 (4.00E-15) | MSP3|MICROSPORE-SPECIFIC PROMOTER 3; WRKY34|WRKY DNA-binding protein 34 |
| CRO_T015874 | AT5G16860 (1.00E-118) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T023293 | AT4G10030 (2.00E-127) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000735 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding CST complex riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity Riboflavin metabolism riboflavin biosynthetic process cytokinins degradation flavin biosynthesis I (bacteria and plants) Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family cation binding single-stranded DNA binding phosphoprotein phosphatase activity oxidation-reduction process chloroplast stroma transferase activity | details |
| CFinderADM000867 | L-histidine biosynthesis L-glutamine degradation I Biosynthesis of amino acids 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity phosphoribosylglycinamide formyltransferase activity oxo-acid-lyase activity transferase activity, transferring pentosyl groups imidazoleglycerol-phosphate synthase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I riboflavin synthase complex tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate mitochondrial proton-transporting ATP synthase complex assembly auxin efflux transmembrane transporter activity flavin biosynthesis I (bacteria and plants) Folate biosynthesis Riboflavin metabolism tetrahydrofolate biosynthesis II 'de novo' IMP biosynthetic process riboflavin biosynthetic process histidine biosynthetic process folic acid-containing compound biosynthetic process auxin homeostasis protein complex cellular amino acid biosynthetic process auxin polar transport auxin-activated signaling pathway ligase activity chloroplast embryo development ending in seed dormancy mitochondrial inner membrane Purine metabolism | details |
| CFinderADM000933 | chloroplast stroma riboflavin synthase complex phosphoribosylglycinamide formyltransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate pyruvate dehydrogenase (acetyl-transferring) activity acetyl-CoA biosynthetic process from pyruvate folic acid-containing compound biosynthetic process riboflavin biosynthetic process 'de novo' IMP biosynthetic process flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc amino acid binding unfolded protein binding response to stress ligase activity protein folding chloroplast thylakoid membrane cell wall Purine metabolism Protein processing in endoplasmic reticulum Carbon metabolism | details |
| CFinderADM000960 | methylation zinc ion binding S-adenosylmethionine-dependent methyltransferase activity methyltransferase activity endosome integral component of membrane vacuolar membrane trans-Golgi network Golgi apparatus binding | details |
| CFinderADM000961 | heterocyclic compound binding organic cyclic compound binding binding | details |
| CFinderADM000967 | riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity response to benzoic acid salicylic acid biosynthetic process regulation of salicylic acid metabolic process systemic acquired resistance Riboflavin metabolism plant-type hypersensitive response response to nitrate riboflavin biosynthetic process flavin biosynthesis I (bacteria and plants) Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: Trihelix benzoate biosynthesis I (CoA-dependent, β-oxidative) defense response to bacterium proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity ligase activity protein ubiquitination Ubiquitin_Proteasome_system, E3: RING transferase activity chloroplast stroma | details |
| CFinderADM001073 | riboflavin synthase complex 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis galacturonate binding 6,7-dimethyl-8-ribityllumazine synthase activity L-tyrosine:2-oxoglutarate aminotransferase activity rosmarinic acid biosynthesis I cytokinin dehydrogenase activity cell-cell signaling L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) cytokinins degradation flavin biosynthesis I (bacteria and plants) cytokinin metabolic process riboflavin biosynthetic process enzyme inhibitor activity lipid transport cellular amino acid metabolic process Riboflavin metabolism Transcription_related, Transcription factor: C2C2-Dof Zeatin biosynthesis cell wall modification negative regulation of catalytic activity biosynthetic process aspartyl esterase activity oxidoreductase activity, acting on CH-OH group of donors pectin catabolic process lipid binding pectinesterase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: C2H2 Biosynthesis of amino acids Pentose and glucuronate interconversions flavin adenine dinucleotide binding pyridoxal phosphate binding transport | details |
| CFinderADM001423 | structural constituent of ribosome cytosolic small ribosomal subunit nuclear-transcribed mRNA catabolic process positive regulation of translational fidelity translation large ribosomal subunit rRNA binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase ribosomal large subunit assembly cytoplasmic translation preribosome, large subunit precursor rRNA processing rRNA binding intracellular signal transduction cytosolic large ribosomal subunit nucleolus Ribosome protein serine/threonine kinase activity | details |
| CFinderADM001570 | regulation of ruffle assembly ruffle membrane protein metabolic process fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) protein histidine kinase binding phosphatidylinositol binding Transcription_related, Transcription regulator: mTERF Transcription_related, Transcription factor: WRKY glutathione metabolic process glutathione transferase activity Fatty acid metabolism Glutathione metabolism palmitate biosynthesis II (bacteria and plants) transferase activity, transferring acyl groups other than amino-acyl groups fatty acid biosynthetic process chloroplast envelope chloroplast stroma | details |
| CFinderADM002030 | Nucleotide excision repair Selenocompound metabolism S-adenosylmethionine metabolic process selenium compound metabolic process protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity transaminase activity Transcription_related, Transcription regulator: mTERF Transcription_related, Transcription factor: WRKY biosynthetic process S-adenosylmethionine-dependent methyltransferase activity mRNA surveillance pathway signal transduction pyridoxal phosphate binding methylation cytosol | details |
| CFinderADM002136 | plastoquinol-9 biosynthesis I nuclear-transcribed mRNA catabolic process protein phosphatase type 2A regulator activity large ribosomal subunit rRNA binding regulation of protein phosphatase type 2A activity protein phosphatase type 2A complex cytoplasmic translation ribosomal large subunit assembly preribosome, large subunit precursor rRNA processing mRNA surveillance pathway signal transduction cytosolic large ribosomal subunit nucleolus chloroplast envelope structural constituent of ribosome | details |
| CFinderADM002174 | nuclear-transcribed mRNA catabolic process riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity plastoquinol-9 biosynthesis I Riboflavin metabolism flavin biosynthesis I (bacteria and plants) riboflavin biosynthetic process large ribosomal subunit rRNA binding cytoplasmic translation ribosomal large subunit assembly rRNA processing preribosome, large subunit precursor unfolded protein binding protein folding cytosolic large ribosomal subunit nucleolus chloroplast envelope chloroplast stroma transferase activity structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |