CFinderADM001571's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA splice site selection | 6.55E-06 | GO:0006376 |
| spliceosomal complex assembly | 3.43E-05 | GO:0000245 |
| U4/U6 x U5 tri-snRNP complex | 5.23E-05 | GO:0046540 |
| U5 snRNP | 5.23E-05 | GO:0005682 |
| U2-type prespliceosome | 5.23E-05 | GO:0071004 |
| U1 snRNP | 5.23E-05 | GO:0005685 |
| mRNA binding | 0.000102121 | GO:0003729 |
| spliceosomal complex | 0.000106025 | GO:0005681 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002947 | AT5G17440 (9.00E-21) | LUC7 related protein |
| CRO_T003029 | - | - |
| CRO_T015399 | AT3G24730 (2.00E-69) | mRNA splicing factor, thioredoxin-like U5 snRNP |
| CRO_T023018 | - | - |
| CRO_T024948 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000380 | spliceosomal complex assembly U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex protein binding | details |
| CFinderADM001213 | MAPK signaling pathway - yeast protein domain specific binding nuclear envelope U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex assembly protein import into nucleus spliceosomal complex protein transporter activity protein binding signal transduction | details |
| CFinderADM001214 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) allantoin catabolic process ureide catabolic process purine nucleobase catabolic process ureidoglycine aminohydrolase activity histidine phosphotransfer kinase activity cytokinin-activated signaling pathway protein histidine kinase binding protein domain specific binding spliceosomal complex assembly U4/U6 x U5 tri-snRNP complex U5 snRNP MAPK signaling pathway - yeast spliceosomal complex phosphorelay signal transduction system protein binding Plant hormone signal transduction Purine metabolism phosphorylation integral component of membrane | details |
| CFinderADM001441 | mRNA splice site selection U1 snRNP U2-type prespliceosome mRNA binding | details |
| CFinderADM001695 | primary root development interspecies interaction between organisms spliceosomal complex assembly N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity arginine biosynthetic process MAPK signaling pathway U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex 2-Oxocarboxylic acid metabolism defense response to bacterium phosphoprotein phosphatase activity protein dephosphorylation copper ion binding pyridoxal phosphate binding chloroplast stroma | details |
| CFinderADM002296 | spliceosomal complex assembly U4/U6 x U5 tri-snRNP complex U5 snRNP spliceosomal complex | details |
Expression profiles
 Show details about module gene expression profiling |