CFinderADM001213's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| MAPK signaling pathway - yeast | 2.82E-05 | KEGG pathway |
| protein domain specific binding | 0.000104944 | GO:0019904 |
| nuclear envelope | 0.000116819 | GO:0005635 |
| U5 snRNP | 0.000116819 | GO:0005682 |
| U4/U6 x U5 tri-snRNP complex | 0.000116819 | GO:0046540 |
| spliceosomal complex assembly | 0.00012107 | GO:0000245 |
| protein import into nucleus | 0.000145677 | GO:0006606 |
| spliceosomal complex | 0.000168498 | GO:0005681 |
| protein transporter activity | 0.000760025 | GO:0008565 |
| protein binding | 0.000894041 | GO:0005515 |
| signal transduction | 0.001202163 | GO:0007165 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011885 | AT5G17840 (1.00E-28) | DnaJ/Hsp40 cysteine-rich domain superfamily protein |
| CRO_T015399 | AT3G24730 (2.00E-69) | mRNA splicing factor, thioredoxin-like U5 snRNP |
| CRO_T017781 | AT1G22290 (5.00E-43) | 14-3-3 family protein |
| CRO_T022402 | AT5G49410 (3.00E-49) | unknown protein |
| CRO_T030826 | AT3G59020 (1.00E-13) | ARM repeat superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000380 | spliceosomal complex assembly U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex protein binding | details |
| CFinderADM000779 | IMP dehydrogenase activity peptide metabolic process GMP biosynthetic process Ubiquitin_Proteasome_system, DUB: JAMM guanosine ribonucleotides de novo biosynthesis cullin deneddylation adenosine nucleotides degradation I COP9 signalosome protein disulfide isomerase activity formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex cell metalloendopeptidase activity metal ion binding translation initiation factor activity cell redox homeostasis Purine metabolism RNA transport Protein processing in endoplasmic reticulum proteolysis | details |
| CFinderADM001214 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) allantoin catabolic process ureide catabolic process purine nucleobase catabolic process ureidoglycine aminohydrolase activity histidine phosphotransfer kinase activity cytokinin-activated signaling pathway protein histidine kinase binding protein domain specific binding spliceosomal complex assembly U4/U6 x U5 tri-snRNP complex U5 snRNP MAPK signaling pathway - yeast spliceosomal complex phosphorelay signal transduction system protein binding Plant hormone signal transduction Purine metabolism phosphorylation integral component of membrane | details |
| CFinderADM001571 | mRNA splice site selection spliceosomal complex assembly U4/U6 x U5 tri-snRNP complex U5 snRNP U2-type prespliceosome U1 snRNP mRNA binding spliceosomal complex | details |
| CFinderADM001695 | primary root development interspecies interaction between organisms spliceosomal complex assembly N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity arginine biosynthetic process MAPK signaling pathway U5 snRNP U4/U6 x U5 tri-snRNP complex spliceosomal complex 2-Oxocarboxylic acid metabolism defense response to bacterium phosphoprotein phosphatase activity protein dephosphorylation copper ion binding pyridoxal phosphate binding chloroplast stroma | details |
| CFinderADM001926 | diaminopimelate decarboxylase activity lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI lactoylglutathione lyase activity Pyruvate metabolism Biosynthesis of amino acids protein binding membrane catalytic activity cytosol chloroplast | details |
| CFinderADM001993 | diaminopimelate decarboxylase activity lysine biosynthetic process via diaminopimelate L-lysine biosynthesis VI protein binding Biosynthesis of amino acids | details |
| CFinderADM002296 | spliceosomal complex assembly U4/U6 x U5 tri-snRNP complex U5 snRNP spliceosomal complex | details |
Expression profiles
 Show details about module gene expression profiling |