CFinderADM001612's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adenosine ribonucleotides de novo biosynthesis | 0.000131618 | plantCyc |
| Regulation of actin cytoskeleton | 0.000195788 | KEGG pathway |
| multidimensional cell growth | 0.000204273 | GO:0009825 |
| actin filament organization | 0.000204273 | GO:0007015 |
| trichome morphogenesis | 0.000204273 | GO:0010090 |
| proton-transporting ATPase activity, rotational mechanism | 0.000476957 | GO:0046961 |
| proton-transporting ATP synthase activity, rotational mechanism | 0.000476957 | GO:0046933 |
| positive regulation of transcription, DNA-templated | 0.000575618 | GO:0045893 |
| ATP synthesis coupled proton transport | 0.000575618 | GO:0015986 |
| proton-transporting ATP synthase complex, catalytic core F(1) | 0.000580521 | GO:0045261 |
| methyltransferase activity | 0.002666925 | GO:0008168 |
| mitochondrial inner membrane | 0.003157694 | GO:0005743 |
| endoplasmic reticulum membrane | 0.005289346 | GO:0005789 |
| methylation | 0.007309171 | GO:0032259 |
| Oxidative phosphorylation | 0.009648998 | KEGG pathway |
| zinc ion binding | 0.047309879 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000224 | AT3G23330 (1.00E-131) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T001853 | AT2G33040 (2.00E-149) | ATP3|gamma subunit of Mt ATP synthase |
| CRO_T001952 | AT1G04430 (2.00E-98) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T020136 | AT2G35110 (8.00E-117) | GRL|GNARLED; NAP1|NCK-ASSOCIATED PROTEIN 1 |
| CRO_T028023 | AT5G24500 (3.00E-16) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000960 | methylation zinc ion binding S-adenosylmethionine-dependent methyltransferase activity methyltransferase activity endosome integral component of membrane vacuolar membrane trans-Golgi network Golgi apparatus binding | details |
| CFinderADM001821 | phosphoacetylglucosamine mutase activity UDP-N-acetyl-D-glucosamine biosynthesis II lignin metabolic process UDP-N-acetylglucosamine biosynthetic process plant-type secondary cell wall biogenesis brassinosteroid biosynthetic process unidimensional cell growth Steroid biosynthesis Amino sugar and nucleotide sugar metabolism oxidoreductase activity, acting on CH-OH group of donors calmodulin binding flavin adenine dinucleotide binding methyltransferase activity methylation carbohydrate metabolic process vacuolar membrane plasmodesma | details |
| CFinderADM001946 | adenosine ribonucleotides de novo biosynthesis histone H3 acetylation root morphogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc H3 histone acetyltransferase activity Notch signaling pathway histone acetyltransferase complex Transcription_related, Transcription regulator: GNAT flower development response to light stimulus proton-transporting ATP synthase complex, catalytic core F(1) ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism mitochondrial inner membrane Oxidative phosphorylation RNA binding | details |
| CFinderADM002041 | nucleus tetrapyrrole binding negative regulation of chlorophyll biosynthetic process ATP-dependent chromatin remodeling chloroplast-nucleus signaling pathway regulation of DNA-templated transcription, elongation organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic red or far-red light signaling pathway MAPK signaling pathway Regulation of actin cytoskeleton integral component of endoplasmic reticulum membrane nuclear envelope DNA-dependent ATPase activity actin filament organization cytosol trichome morphogenesis multidimensional cell growth Transcription_related, Transcription regulator: SNF2 phosphoprotein phosphatase activity chromatin binding positive regulation of transcription, DNA-templated regulation of transcription from RNA polymerase II promoter protein dephosphorylation endoplasmic reticulum membrane Ribosome plasmodesma formation of glycosidic bonds, GlycosylTransferases: GTnc translation transcription, DNA-templated structural constituent of ribosome regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |