CFinderADM002041's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleus | 8.36E-06 | GO:0005634 |
| tetrapyrrole binding | 1.76E-05 | GO:0046906 |
| negative regulation of chlorophyll biosynthetic process | 3.06E-05 | GO:1902325 |
| ATP-dependent chromatin remodeling | 3.57E-05 | GO:0043044 |
| chloroplast-nucleus signaling pathway | 3.57E-05 | GO:0010019 |
| regulation of DNA-templated transcription, elongation | 3.57E-05 | GO:0032784 |
| organ boundary specification between lateral organs and the meristem | 3.57E-05 | GO:0010199 |
| regulation of gene expression, epigenetic | 3.57E-05 | GO:0040029 |
| red or far-red light signaling pathway | 4.08E-05 | GO:0010017 |
| MAPK signaling pathway | 9.79E-05 | KEGG pathway |
| Regulation of actin cytoskeleton | 9.79E-05 | KEGG pathway |
| integral component of endoplasmic reticulum membrane | 9.83E-05 | GO:0030176 |
| nuclear envelope | 0.000142805 | GO:0005635 |
| DNA-dependent ATPase activity | 0.000153349 | GO:0008094 |
| actin filament organization | 0.000194734 | GO:0007015 |
| cytosol | 0.000203814 | GO:0005829 |
| trichome morphogenesis | 0.000213724 | GO:0010090 |
| multidimensional cell growth | 0.000213724 | GO:0009825 |
| Transcription_related, Transcription regulator: SNF2 | 0.000703046 | TF family |
| phosphoprotein phosphatase activity | 0.000752109 | GO:0004721 |
| chromatin binding | 0.000752109 | GO:0003682 |
| positive regulation of transcription, DNA-templated | 0.000832575 | GO:0045893 |
| regulation of transcription from RNA polymerase II promoter | 0.000992987 | GO:0006357 |
| protein dephosphorylation | 0.002816394 | GO:0006470 |
| endoplasmic reticulum membrane | 0.003885282 | GO:0005789 |
| Ribosome | 0.003885282 | KEGG pathway |
| plasmodesma | 0.008285063 | GO:0009506 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009496679 | cazy family |
| translation | 0.018746766 | GO:0006412 |
| transcription, DNA-templated | 0.018746766 | GO:0006351 |
| structural constituent of ribosome | 0.02258503 | GO:0003735 |
| regulation of transcription, DNA-templated | 0.043511234 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004516 | AT4G08350 (4.00E-51) | GTA2|global transcription factor group A2 |
| CRO_T008508 | AT2G42810 (3.00E-110) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T020136 | AT2G35110 (8.00E-117) | GRL|GNARLED; NAP1|NCK-ASSOCIATED PROTEIN 1 |
| CRO_T027779 | AT1G12775 (3.00E-49) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T029437 | AT2G46020 (0) | ATBRM|BRAHMA; CHR2|CHROMATIN REMODELING 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000920 | negative regulation of chlorophyll biosynthetic process tetrapyrrole binding red or far-red light signaling pathway chloroplast-nucleus signaling pathway TCA cycle II (plants and fungi) MAPK signaling pathway integral component of endoplasmic reticulum membrane nuclear envelope Transcription_related, Transcription factor: RWP-RK cellular protein metabolic process Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII phosphoprotein phosphatase activity lyase activity protein dephosphorylation copper ion binding ligase activity ATP binding Carbon metabolism adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasmodesma metabolic process Ubiquitin_Proteasome_system, E3: RING protein serine/threonine kinase activity | details |
| CFinderADM001254 | posttranscriptional gene silencing by RNA organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic mRNA catabolic process production of small RNA involved in gene silencing by RNA ATP-dependent chromatin remodeling rRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic mRNA processing 3'-5'-exoribonuclease activity DNA-dependent ATPase activity nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) proteasome complex endonuclease activity mediator complex Viral carcinogenesis nucleosome rRNA processing Transcription_related, Transcription regulator: SNF2 chromatin binding Proteasome Transcription_related, Transcription factor: HB proteasome-mediated ubiquitin-dependent protein catabolic process RNA degradation vesicle-mediated transport protein heterodimerization activity Plant hormone signal transduction nucleus | details |
| CFinderADM001612 | adenosine ribonucleotides de novo biosynthesis Regulation of actin cytoskeleton multidimensional cell growth actin filament organization trichome morphogenesis proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism positive regulation of transcription, DNA-templated ATP synthesis coupled proton transport proton-transporting ATP synthase complex, catalytic core F(1) methyltransferase activity mitochondrial inner membrane endoplasmic reticulum membrane methylation Oxidative phosphorylation zinc ion binding | details |
| CFinderADM001793 | formation of glycosidic bonds, GlycosylTransferases: GTnc porin activity pore complex voltage-gated anion channel activity mitochondrial outer membrane Calcium signaling pathway anion transport regulation of anion transmembrane transport aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation transmembrane transport | details |
| CFinderADM002010 | organ boundary specification between lateral organs and the meristem ATP-dependent chromatin remodeling regulation of gene expression, epigenetic MAPK signaling pathway - yeast cytoplasmic microtubule organization DNA-dependent ATPase activity protein domain specific binding microtubule-severing ATPase activity Transcription_related, Transcription regulator: SNF2 chromatin binding response to stimulus nucleus ATP binding regulation of transcription, DNA-templated cytosol | details |
| CFinderADM002055 | DNA-directed RNA polymerase V complex DNA-directed RNA polymerase IV complex organ boundary specification between lateral organs and the meristem rRNA catabolic process stomatal complex development stomatal complex patterning ATP-dependent chromatin remodeling mRNA catabolic process regulation of gene expression, epigenetic RNA phosphodiester bond hydrolysis, exonucleolytic cytoplasmic exosome (RNase complex) DNA-directed RNA polymerase II, core complex nuclear exosome (RNase complex) RNA polymerase II activity 3'-5'-exoribonuclease activity DNA-dependent ATPase activity Transcription_related, Transcription regulator: SNF2 cytosol endonuclease activity rRNA processing translational initiation chromatin binding rRNA binding translation initiation factor activity RNA degradation protein dimerization activity nucleolus Ribosome Purine metabolism RNA transport translation transcription, DNA-templated structural constituent of ribosome | details |
| CFinderADM002197 | formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Ras signaling pathway small GTPase mediated signal transduction GTP binding protein phosphorylation protein serine/threonine kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |