CFinderADM001624's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| positive regulation of DNA-templated transcription, elongation | 1.01E-05 | GO:0032786 |
| membrane coat | 0.000222384 | GO:0030117 |
| ABC transporters | 0.000373573 | KEGG pathway |
| Lysosome | 0.000373573 | KEGG pathway |
| Peroxisome | 0.000373573 | KEGG pathway |
| vesicle-mediated transport | 0.003462393 | GO:0016192 |
| intracellular protein transport | 0.00559925 | GO:0006886 |
| ATPase activity, coupled to transmembrane movement of substances | 0.006233512 | GO:0042626 |
| plasmodesma | 0.017447622 | GO:0009506 |
| transmembrane transport | 0.025317458 | GO:0055085 |
| transcription, DNA-templated | 0.025363528 | GO:0006351 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002312 | AT5G25070 (2.00E-96) | unknown protein |
| CRO_T008638 | AT3G03490 (8.00E-68) | PEX19-1|peroxin 19-1 |
| CRO_T014392 | AT5G08565 (1.00E-40) | Transcription initiation Spt4-like protein |
| CRO_T028174 | AT1G31730 (0) | Adaptin family protein |
| CRO_T029150 | AT3G55320 (1.00E-70) | ABCB20|ATP-binding cassette B20; PGP20|P-glycoprotein 20 |
| CRO_T029324 | AT5G05930 (9.00E-39) | ATGC1|ARABIDOPSIS GUANYLYL CYCLASE 1; GC1|guanylyl cyclase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001305 | Circadian rhythm DNA (6-4) photolyase activity response to UV ABC transporters aerobic respiration I (cytochrome c) DNA repair chloroplast ATPase activity, coupled to transmembrane movement of substances nucleus transmembrane transport | details |
| CFinderADM001306 | Circadian rhythm DNA (6-4) photolyase activity response to UV photoreactive repair deoxyribodipyrimidine photo-lyase activity UV protection Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX salicylate glucosides biosynthesis II transmembrane transport organophosphate ester transport organic phosphonate transport ABC transporters organic phosphonate transmembrane-transporting ATPase activity ATP binding quercetin glucoside biosynthesis (Allium) aerobic respiration I (cytochrome c) quercetin gentiotetraside biosynthesis DNA repair ATPase activity, coupled to transmembrane movement of substances protein ubiquitination ubiquitin-protein transferase activity protein kinase activity nucleus | details |
| CFinderADM002253 | Transcription_related, Transcription regulator: IWS1 peroxiredoxin activity G-protein beta/gamma-subunit complex binding cellular nitrogen compound biosynthetic process ABC transporters G-protein coupled receptor signaling pathway gene expression cellular macromolecule biosynthetic process signal transducer activity mitochondrial matrix primary metabolic process response to oxidative stress cellular oxidant detoxification ATPase activity, coupled to transmembrane movement of substances peroxidase activity GTPase activity ubiquitin-protein transferase activity protein ubiquitination GTP binding transmembrane transport nucleic acid binding | details |
| CFinderADM002255 | positive regulation of DNA-templated transcription, elongation vesicle docking cell periphery viral nucleocapsid intracellular ribonucleoprotein complex exocyst single-organism process exocytosis RNA processing cytoplasmic part cellular process Spliceosome transport plasmodesma transcription, DNA-templated zinc ion binding | details |
Expression profiles
 Show details about module gene expression profiling |